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Macrophages orchestrate antiviral defense and epithelial repair in a human iPSC-derived alveolar air-liquid interface
Declan L. Turner, Hannah Baric, Katelyn Patatsos, Sahel Amoozadeh, Michael See, Kathleen A. Strumila, Jack T. Murphy, Jeremy J. Wiyana, Liam Gubbels, Elizabeth S. Ng, Andrew G. Elefanty, Melanie R. Neeland, Shivanthan Shanthikumar, Sarah L. Londrigan, Mirana Ramialison, Fernando J. Rossello, Ed G. Stanley, Rhiannon B. Werder
Declan L. Turner, Hannah Baric, Katelyn Patatsos, Sahel Amoozadeh, Michael See, Kathleen A. Strumila, Jack T. Murphy, Jeremy J. Wiyana, Liam Gubbels, Elizabeth S. Ng, Andrew G. Elefanty, Melanie R. Neeland, Shivanthan Shanthikumar, Sarah L. Londrigan, Mirana Ramialison, Fernando J. Rossello, Ed G. Stanley, Rhiannon B. Werder
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Research Article Cell biology Infectious disease Inflammation

Macrophages orchestrate antiviral defense and epithelial repair in a human iPSC-derived alveolar air-liquid interface

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Abstract

The lung alveoli are continually exposed to inhaled pathogens and environmental hazards and rely on coordinated communication between alveolar macrophages and type 2 alveolar epithelial cells (AT2s) to maintain homeostasis. Disruption of these interactions can impair immunity and repair, contributing to acute and chronic respiratory diseases. To better define these mechanisms and support therapeutic discovery, we established a human iPSC-derived air-liquid interface platform that captures key features of AT2-macrophage crosstalk. Using this system, we show that coculture enhances AT2-specific transcriptional programs including lipid synthesis, while macrophages actively phagocytose AT2-derived surfactant. iPSC-derived macrophages adopt an alveolar macrophage–like phenotype and respond to AT2-derived M-CSF. During respiratory infection, macrophages play a crucial role in modulating epithelial inflammatory responses, augmenting antiviral immunity, and limiting viral replication. We further identify a role for macrophages in epithelial repair, where VEGF-mediated signaling to macrophages increases epithelial permeability during viral infection. Together, these findings reveal dimensions of AT2-macrophage cooperation in homeostasis, infection, and repair, and demonstrate how this iPSC-derived platform can be used to dissect mechanisms that may initiate or drive the progression of respiratory diseases.

Authors

Declan L. Turner, Hannah Baric, Katelyn Patatsos, Sahel Amoozadeh, Michael See, Kathleen A. Strumila, Jack T. Murphy, Jeremy J. Wiyana, Liam Gubbels, Elizabeth S. Ng, Andrew G. Elefanty, Melanie R. Neeland, Shivanthan Shanthikumar, Sarah L. Londrigan, Mirana Ramialison, Fernando J. Rossello, Ed G. Stanley, Rhiannon B. Werder

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Figure 4

iMacs augment inflammation and antiviral immunity during viral infections of cocultures.

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iMacs augment inflammation and antiviral immunity during viral infection...
(A) qRT-PCR for RSV N and CXCL10 expression after RSV (MOI 1) infection of iAT2 alone, iAT2-iMac cocultures, or iMac alone. (B) scRNA-Seq analysis of iAT2 alone, iMac alone, and cocultures 48 hours after RSV (MOI 10) infection. UMAP of cells showing original identity. (C) Louvain clustering and proportion of each population to each cluster. (D) UMAP with module score (whole genome) of RSV transcript expression. (E and F) Gene sets enriched in iMacs after coculture from the Hallmark database. (G) Module score (whole genome) of RSV transcript expression in each population. (H) UMAP with module score of “Interferon Alpha Response” from the Hallmark database highlighted. (I) Feature plots of select IFN-stimulated genes highlighting distinct responses between RSV-infected populations. (J) IFNE expression in Louvain clusters (resolution 0.4, C). (K) Shed RSV collected in apical washes from iAT2 alone or iAT2-iMac cocultured ALIs over 11 days. Infectious RSV was titered by plaque assay, n = 3, data shown as mean ± SD, statistical significance was determined by 2-way ANOVA with Tukey’s post hoc test; *P<0.05, ****P < 0.0001.

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