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CHD7 represses the retinoic acid synthesis enzyme ALDH1A3 during inner ear development
Hui Yao, Sophie F. Hill, Jennifer M. Skidmore, Ethan D. Sperry, Donald L. Swiderski, Gilson J. Sanchez, Cynthia F. Bartels, Yehoash Raphael, Peter C. Scacheri, Shigeki Iwase, Donna M. Martin
Hui Yao, Sophie F. Hill, Jennifer M. Skidmore, Ethan D. Sperry, Donald L. Swiderski, Gilson J. Sanchez, Cynthia F. Bartels, Yehoash Raphael, Peter C. Scacheri, Shigeki Iwase, Donna M. Martin
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Research Article Development Neuroscience

CHD7 represses the retinoic acid synthesis enzyme ALDH1A3 during inner ear development

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Abstract

CHD7, an ATP-dependent chromatin remodeler, is disrupted in CHARGE syndrome, an autosomal dominant disorder characterized by variably penetrant abnormalities in craniofacial, cardiac, and nervous system tissues. The inner ear is uniquely sensitive to CHD7 levels and is the most commonly affected organ in individuals with CHARGE. Interestingly, upregulation or downregulation of retinoic acid (RA) signaling during embryogenesis also leads to developmental defects similar to those in CHARGE syndrome, suggesting that CHD7 and RA may have common target genes or signaling pathways. Here, we tested three separate potential mechanisms for CHD7 and RA interaction: (a) direct binding of CHD7 with RA receptors, (b) regulation of CHD7 levels by RA, and (c) CHD7 binding and regulation of RA-related genes. We show that CHD7 directly regulates expression of Aldh1a3, the gene encoding the RA synthetic enzyme ALDH1A3 and that loss of Aldh1a3 partially rescues Chd7 mutant mouse inner ear defects. Together, these studies indicate that ALDH1A3 acts with CHD7 in a common genetic pathway to regulate inner ear development, providing insights into how CHD7 and RA regulate gene expression and morphogenesis in the developing embryo.

Authors

Hui Yao, Sophie F. Hill, Jennifer M. Skidmore, Ethan D. Sperry, Donald L. Swiderski, Gilson J. Sanchez, Cynthia F. Bartels, Yehoash Raphael, Peter C. Scacheri, Shigeki Iwase, Donna M. Martin

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Figure 7

Chd7 dosage does not affect global retinoic acid reporter activity.

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Chd7 dosage does not affect global retinoic acid reporter activity.
(A–...
(A–G) E10.5, E11.5, or E12.5 embryos containing RARE-lacZ transgene and 2 (Chd7+/+), 1 (Chd7+/–), or no (Chd7–/–) wild-type alleles for Chd7 were stained with X-gal to reflect RA activity. Chd7–/– embryos were hypoplastic and did not survive beyond E10.5; otherwise, no differences in X-gal staining pattern between wild-type and Chd7 mutant embryos were noted. Embryo counts are as follows: Chd7+/+ — E10.5, n = 4; E11.5, n = 4; E12.5, n = 5; Chd7+/– — E10.5, n = 8; E11.5, n = 5; E12.5, n = 7; Chd7–/– — E10.5, n = 1. (H) Overexpression of FLAG-HA-hCHD7 in 293T cells has no effect on RARE-luciferase reporter in the presence or absence of 1 μM all-trans retinoic acid (RA). K998R CHD7 missense mutant construct also has no effect on RARE-luciferase reporter activity. Data are shown as luciferase normalized to Renilla. (I) siRNA knockdown of hCHD7 in 293T cells does not alter RARE-luciferase reporter activity, in the presence or absence of 1 μM RA. Control siRNA against cyclophilin B enhances RA activity as expected (35). Data are shown as luciferase normalized to Renilla. Significance was determined by ordinary 1-way ANOVA tests. **P ≤ 0.001.

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