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CHD7 represses the retinoic acid synthesis enzyme ALDH1A3 during inner ear development
Hui Yao, Sophie F. Hill, Jennifer M. Skidmore, Ethan D. Sperry, Donald L. Swiderski, Gilson J. Sanchez, Cynthia F. Bartels, Yehoash Raphael, Peter C. Scacheri, Shigeki Iwase, Donna M. Martin
Hui Yao, Sophie F. Hill, Jennifer M. Skidmore, Ethan D. Sperry, Donald L. Swiderski, Gilson J. Sanchez, Cynthia F. Bartels, Yehoash Raphael, Peter C. Scacheri, Shigeki Iwase, Donna M. Martin
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Research Article Development Neuroscience

CHD7 represses the retinoic acid synthesis enzyme ALDH1A3 during inner ear development

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Abstract

CHD7, an ATP-dependent chromatin remodeler, is disrupted in CHARGE syndrome, an autosomal dominant disorder characterized by variably penetrant abnormalities in craniofacial, cardiac, and nervous system tissues. The inner ear is uniquely sensitive to CHD7 levels and is the most commonly affected organ in individuals with CHARGE. Interestingly, upregulation or downregulation of retinoic acid (RA) signaling during embryogenesis also leads to developmental defects similar to those in CHARGE syndrome, suggesting that CHD7 and RA may have common target genes or signaling pathways. Here, we tested three separate potential mechanisms for CHD7 and RA interaction: (a) direct binding of CHD7 with RA receptors, (b) regulation of CHD7 levels by RA, and (c) CHD7 binding and regulation of RA-related genes. We show that CHD7 directly regulates expression of Aldh1a3, the gene encoding the RA synthetic enzyme ALDH1A3 and that loss of Aldh1a3 partially rescues Chd7 mutant mouse inner ear defects. Together, these studies indicate that ALDH1A3 acts with CHD7 in a common genetic pathway to regulate inner ear development, providing insights into how CHD7 and RA regulate gene expression and morphogenesis in the developing embryo.

Authors

Hui Yao, Sophie F. Hill, Jennifer M. Skidmore, Ethan D. Sperry, Donald L. Swiderski, Gilson J. Sanchez, Cynthia F. Bartels, Yehoash Raphael, Peter C. Scacheri, Shigeki Iwase, Donna M. Martin

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Figure 2

Aldh1a3 is misregulated in Chd7 mutant mouse ears.

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Aldh1a3 is misregulated in Chd7 mutant mouse ears.
(A) Representative q...
(A) Representative qRT-PCR data showing fold change in expression of Chd7 and Aldh1a3 in Chd7Gt/+ E10.5 mouse otocysts compared with Chd7+/+ otocysts. This experiment was repeated 6 times. (B) Representative qRT-PCR data showing fold change in expression of Aldh1a3 and Chd7 in Aldh1a3+/– and Aldh1a3–/– E10.5 mouse otocysts compared with Aldh1a3+/+ otocysts. This experiment was repeated 13 times. (C) Representative qRT-PCR data showing fold change in Chd7 and Aldh1a3 expression in neural progenitors differentiated from Chd7Gt/+ and Chd7Gt/Gt mouse embryonic stem cells compared with those differentiated from Chd7+/+ mouse embryonic stem cells. This experiment was repeated twice. Significance was determined by Student’s t tests, and P values were corrected using the Bonferroni method. ***P ≤ 0.001. (D–F) In situ hybridization of sectioned littermate E10.5 inner ears shows increased Aldh1a3 expression in Chd7Gt/Gt inner ears compared with Chd7Gt/+ and Chd7+/+ inner ears (n = 6 ears per genotype). Regions of high expression in the otocyst are demarcated by solid bars. Scale bars: 100 μm.

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