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Derivation and characterization of ubiquitin-specific protease 18 inhibitors
Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky
Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky
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Research Article Cell biology Oncology

Derivation and characterization of ubiquitin-specific protease 18 inhibitors

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Abstract

Ubiquitin-Specific Protease 18 (USP18) is a deISGylation enzyme and antineoplastic target. To develop USP18 inhibitors, an enzymatically active human recombinant USP18 protein was engineered suitable for high-throughput screening of ~80,000 chemical compounds. Three of them substantially inhibited USP18 enzymatic activity, with β-lapachone having prominent antineoplastic activity. Independent β-lapachone treatments of murine and human lung cancer cell lines statistically significantly reduced proliferation and increased apoptosis. Gain of USP18 expression antagonized these effects. β-Lapachone treatments statistically significantly repressed lung cancer xenograft growth. β-Lapachone increased reactive oxygen species (ROS), but antineoplastic effects occurred at dosages with negligible ROS production. ROS scavenger treatments did not rescue β-lapachone effects at these concentrations, consistent with an ROS-independent mechanism. IFN-Stimulated Response Element (ISRE) reporter assays following β-lapachone treatment activated this reporter. USP18 cotransfection antagonized this activity. β-Lapachone treatments increased global ISGylation. RNA-seq of lung cancer cells engineered with or without enhanced USP18 expression showed specific pathways affected by β-lapachone treatment. Proteomic analysis of these treated cells revealed known and new ISGylated proteins. In silico modeling identified a unique USP18 pocket where these USP18 inhibitors bind. Engineered mutation of this pocket disrupted β-lapachone activity. Taken together, β-lapachone is an antineoplastic tool compound useful for USP18 inhibitor development.

Authors

Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky

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Figure 1

High-throughput screen identifies candidate USP18 small molecule inhibitors.

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High-throughput screen identifies candidate USP18 small molecule inhibit...
(A) The features of the 79,493-compound library used for high-throughput screening are displayed, showing the proportions of fragment, kinase, diversity, biologically annotated, and academic compound sets that were interrogated. (B) The diagram of the fluorogenic enzymatic assay used to identify small-molecule USP18 inhibitors is shown. Recombinant, enzymatically active recombinant USP18 deconjugated ISG15-AMC substrate, and fluorescence intensity was used to calculate the percentage inhibition of each tested compound. (C) Schematic representation of the GFP-tagged USP18 expression vector used to generate enzymatically active USP18 protein. (D) Immunoblot analysis of USP18 species before and after 3C protease cleavage confirmed the production of the enzymatically active USP18 used for the biochemical assays. (E) Workflow of the screening strategy indicated the progression from primary screening to hit validation, including the selection of 13 primary hits, 3 reproducible USP18-inhibitory compounds, and identification of β-lapachone as the lead compound for further evaluation. (F) Dose-response inhibition curves of β-lapachone, 9,10-phenanthrenequinone, and 2-nitrophenanthrene-9,10-dione are displayed using the same fluorogenic enzymatic assay described in B. (G) The percent of ROS production was measured in human A549 and H1299 lung cancer cell lines following β-lapachone treatment at the indicated concentrations with or without cotreatment with the ROS scavenger N-acetylcysteine (NAC, 10 mM). Two-tailed Student’s t tests compared differences between arms with a P < 0.05 deemed statistically significant. Data are shown as mean ± SD with the symbols indicating *P < 0.05 and **P < 0.01, respectively.

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