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Development and preclinical evaluation of next-generation ΔsigH-based live candidate vaccines
Garima Arora, Caden W. Munson, Mushtaq Ahmed, Vinay Shivanna, Annu Devi, Venkata S.R. Devireddy, Basil Antony, Shannan Hall-Ursone, Olga D. Gonzalez, Edward J. Dick Jr., Chinnaswamy Jagannath, Xavier Alvarez, Smriti Mehra, Shabaana A. Khader, Dhiraj K. Singh, Deepak Kaushal
Garima Arora, Caden W. Munson, Mushtaq Ahmed, Vinay Shivanna, Annu Devi, Venkata S.R. Devireddy, Basil Antony, Shannan Hall-Ursone, Olga D. Gonzalez, Edward J. Dick Jr., Chinnaswamy Jagannath, Xavier Alvarez, Smriti Mehra, Shabaana A. Khader, Dhiraj K. Singh, Deepak Kaushal
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Research Article Infectious disease Microbiology

Development and preclinical evaluation of next-generation ΔsigH-based live candidate vaccines

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Abstract

To radically diminish tuberculosis (TB) incidence and mortality by 2035, as set out by the WHO End TB Strategy, there is a desperate need for improved TB therapies and a more effective vaccine against the deadly pathogen Mycobacterium tuberculosis. Aerosol vaccination with the MtbΔsigH mutant protects 2 species of nonhuman primates against lethal TB challenge by invoking vastly superior T and B cell responses in the lungs through superior antigen presentation and interferon conditioning. Since the Geneva Consensus on essential steps toward the development of live mycobacterial vaccines recommends that live TB vaccines incorporate at least 2 independent gene knockouts, we have now generated several rationally designed, double-knockout (DKO) and triple-knockout (TKO) mutants in Mtb, each containing the ΔsigH deletion. Here, we report preclinical studies in the rhesus macaque model of aerosol infection and SIV/HIV coinfection, aimed at assessing the safety of these MtbΔsigH-based DKOs and TKOs. We found that most of these mutant strains were attenuated in both immunocompetent and SIV-coinfected macaques, and combinatorial infection with these generated strong cellular immune responses in the lung, akin to MtbΔsigH. Aerosol infection with these KO strains elicited inducible bronchus-associated lymphoid tissue, which is a correlate of protection from TB.

Authors

Garima Arora, Caden W. Munson, Mushtaq Ahmed, Vinay Shivanna, Annu Devi, Venkata S.R. Devireddy, Basil Antony, Shannan Hall-Ursone, Olga D. Gonzalez, Edward J. Dick Jr., Chinnaswamy Jagannath, Xavier Alvarez, Smriti Mehra, Shabaana A. Khader, Dhiraj K. Singh, Deepak Kaushal

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Figure 3

Clinical outcomes of Mtb KOs and subsequent SIV challenge in rhesus macaques.

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Clinical outcomes of Mtb KOs and subsequent SIV challenge in rhesus maca...
(A) Study outline. Created in BioRender. Kaushal, D. (2025) https://BioRender.com/q65y137 Six Indian rhesus macaques were challenged with a mixture of all 8 MtbΔsigH-based knockouts with a targeted dose of 50–100 CFU of each strain. Shown are serum C-reactive protein (CRP) levels after Mtb KOs challenge (B), serum CRP levels after SIV challenge (C), and viral loads in plasma (D) and BAL supernatants (E) of the macaques measured at 4 weeks after SIV challenge. CD4+ and CD8+ T cells were measured in BAL at 4 weeks after Mtb KOs challenge (F) and 4 weeks after SIV challenge (G). Control data shown (for Mtb wild-type, MtbΔsigH, Mtb/SIV, and MtbΔsigH/SIV) for comparison were obtained from our previously published studies. Box plots show the interquartile range, median (line), and minimum and maximum (whiskers) (B and C). Data are represented as mean ± SEM (D–G).

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