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Development and preclinical evaluation of next-generation ΔsigH-based live candidate vaccines
Garima Arora, … , Dhiraj K. Singh, Deepak Kaushal
Garima Arora, … , Dhiraj K. Singh, Deepak Kaushal
Published August 28, 2025
Citation Information: JCI Insight. 2025;10(19):e195947. https://doi.org/10.1172/jci.insight.195947.
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Research Article Infectious disease Microbiology

Development and preclinical evaluation of next-generation ΔsigH-based live candidate vaccines

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Abstract

To radically diminish tuberculosis (TB) incidence and mortality by 2035, as set out by the WHO End TB Strategy, there is a desperate need for improved TB therapies and a more effective vaccine against the deadly pathogen Mycobacterium tuberculosis. Aerosol vaccination with the MtbΔsigH mutant protects 2 species of nonhuman primates against lethal TB challenge by invoking vastly superior T and B cell responses in the lungs through superior antigen presentation and interferon conditioning. Since the Geneva Consensus on essential steps toward the development of live mycobacterial vaccines recommends that live TB vaccines incorporate at least 2 independent gene knockouts, we have now generated several rationally designed, double-knockout (DKO) and triple-knockout (TKO) mutants in Mtb, each containing the ΔsigH deletion. Here, we report preclinical studies in the rhesus macaque model of aerosol infection and SIV/HIV coinfection, aimed at assessing the safety of these MtbΔsigH-based DKOs and TKOs. We found that most of these mutant strains were attenuated in both immunocompetent and SIV-coinfected macaques, and combinatorial infection with these generated strong cellular immune responses in the lung, akin to MtbΔsigH. Aerosol infection with these KO strains elicited inducible bronchus-associated lymphoid tissue, which is a correlate of protection from TB.

Authors

Garima Arora, Caden W. Munson, Mushtaq Ahmed, Vinay Shivanna, Annu Devi, Venkata S.R. Devireddy, Basil Antony, Shannan Hall-Ursone, Olga D. Gonzalez, Edward J. Dick Jr., Chinnaswamy Jagannath, Xavier Alvarez, Smriti Mehra, Shabaana A. Khader, Dhiraj K. Singh, Deepak Kaushal

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Figure 1

Construction of various double- and triple-knockout strains of M. tuberculosis.

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Construction of various double- and triple-knockout strains of M. tuberc...
Schematic representation of gene locus and PCR-based analysis in the parental (wild-type) and deletion strains of M. tuberculosis CDC1551 are shown. Created in BioRender. Arora, G. (2025) https://BioRender.com/qa76loa The open reading frames of metA (A and B), leuD (C and D), hadC (E and F), MT3785 (G and H), mce4E-mce4F (P and Q), mce1A (I and J), secA2 (K and L), and sapM (M and N) were separately replaced with the hygromycin resistance gene (hygR) in the M. tuberculosis genome. MtbΔmce1A and MtbΔsecA2 were also unmarked in another phage transduction step using the temperature-sensitive mycobacteriophage phAE280 (unmarking phage; ref. 56). In the double-mutant strain, MtbΔsapMΔfbpA, the open reading frame of fbpA was replaced with kanamycin resistance gene (kanR) in the genome of the MtbΔsapM strain (M and O). sigH was replaced with apramycin resistance gene (apraR) in each of the 8 mutant strains. (R and S) The disruptions of various genes, in their respective single- and double-mutant strain, were confirmed by PCR amplification using locus-specific primers. The solid black arrows depict the region of binding by the primers for PCR-based screening. The lanes presented in each panel are derived from the same gel, with images cropped for clarity. Source data are provided as a Supporting Data Values file.

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