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UHRF1 deficiency exacerbates intestinal inflammation by epigenetic modulation of NPY1R gene methylation
Yanan Han, Lina Sun, Yanxing Liu, Xiaohui Zhang, Hao Liu, Haohao Zhang, Xiaoxia Ren, Fenfan Wang, Huafeng Fan, Jie Chen, Dan Liu, Daiming Fan, Yuanyuan Lu, Xue Bai, Ying Fang, Kaichun Wu, Xiaodi Zhao
Yanan Han, Lina Sun, Yanxing Liu, Xiaohui Zhang, Hao Liu, Haohao Zhang, Xiaoxia Ren, Fenfan Wang, Huafeng Fan, Jie Chen, Dan Liu, Daiming Fan, Yuanyuan Lu, Xue Bai, Ying Fang, Kaichun Wu, Xiaodi Zhao
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Research Article Gastroenterology Inflammation

UHRF1 deficiency exacerbates intestinal inflammation by epigenetic modulation of NPY1R gene methylation

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Abstract

Epigenetic modifications play a crucial role in the pathogenesis of inflammatory bowel disease (IBD) by mediating gene-environment interactions. We previously showed that UHRF1, a central regulator of DNA methylation, contributes to cancer progression; however, its function in IBD remains poorly understood. Here, we revealed that UHRF1 was frequently reduced in inflamed tissues of patients with IBD and that its deficiency exacerbated intestinal epithelial cell (IEC) damage. Through a multilevel approach incorporating human cell models and an intestinal epithelial-specific Uhrf1-KO mouse model, we established UHRF1 as a key mitigator of IBD progression. Mechanistically, UHRF1 bound to the NPY1R promoter, promoted its methylation, and led to transcriptional suppression. The NPY1R upregulation resulting from UHRF1 deficiency attenuated cAMP/PKA/CREB signaling in IECs, thereby enhancing NF-κB activation and subsequent proinflammatory responses, which compromised intestinal epithelial barrier integrity. Furthermore, we identified miR-141 as a negative regulator of NPY1R, highlighting its potential as a therapeutic agent. Collectively, our results identified the UHRF1/NPY1R regulatory axis as a critical epigenetic mechanism in intestinal inflammation and underscored its dual promise for IBD diagnostics and therapy.

Authors

Yanan Han, Lina Sun, Yanxing Liu, Xiaohui Zhang, Hao Liu, Haohao Zhang, Xiaoxia Ren, Fenfan Wang, Huafeng Fan, Jie Chen, Dan Liu, Daiming Fan, Yuanyuan Lu, Xue Bai, Ying Fang, Kaichun Wu, Xiaodi Zhao

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Figure 2

UHRF1 deficiency sensitize IECs to inflammatory damage.

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UHRF1 deficiency sensitize IECs to inflammatory damage.
(A) Proliferatio...
(A) Proliferation of NCM460 and FHC cells infected with shUHRF1 or shCtrl. (B) Proliferation of NCM460 and FHC cells infected with UHRF1-overexpressing (UHRF1) vector or empty control (Ctrl) vector and treated with or without DSS. (C) Apoptotic rates of NCM460 and FHC cells with shUHRF1 or shCtrl and treated with or without DSS.(D) Apoptotic rates of NCM460 and FHC cells with UHRF1 or Ctrl and treated with or without DSS. (E) Representative staining images of UHRF1 in colonic tissues from Uhrf1IEC(+/+), Uhrf1IEC(+/–) and Uhrf1IEC(–/–) mice. Scale bar: 100 μm. (F) Representative image and quantification of colon length from Uhrf1IEC(+/+), Uhrf1IEC(+/–) and Uhrf1IEC(–/–) mice (n = 4). (G) Representative H&E-stained colon tissues from Uhrf1IEC(+/+), Uhrf1IEC(+/–) and Uhrf1IEC(–/–) mice. Scale bar: 50 μm. (H) Representative images of IECs from Uhrf1IEC(+/+), Uhrf1IEC(+/–), and Uhrf1IEC(–/–) mice by transmission electron microscopy. Arrows indicate typical apoptotic ultrastructural characteristics present in apoptosis. Scale bar: 5 μm. (I and J) Body weight curve (I) and disease activity index (J) of Uhrf1IEC(+/+) and Uhrf1IEC(+/−) mice treated with DSS for 7 days (n = 5). (K) Colon length of Uhrf1IEC(+/+) and Uhrf1IEC(+/−) mice sacrificed at the end of DSS-induced colitis model (n = 5). (L) Representative H&E staining and histological score of colon tissues from Uhrf1IEC(+/+) and Uhrf1IEC(+/−) mice (n = 5). Scale bar: 100 μm. P values were determined by 2-way ANOVA (A, B, I, and J), 1-way ANOVA (C and F), or 2-tailed Student’s t tests (D, K, and L). Data are shown as mean ± SD. *P < 0.05, **P < 0.01.

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