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N6-methyladenosine (m6A) dysregulation contributes to network excitability in temporal lobe epilepsy
Justine Mathoux, Marc-Michel Wilson, Sujithra Srinivas, Gabrielle Litovskich, Leticia Villalba Benito, Cindy Tran, Jaideep Kesavan, Aileen Harnett, Theresa Auer, Amaya Sanz-Rodriguez, Mohammad Kh. A.E. Alkhayyat, Mairéad Sullivan, Zining Liu, Yifan Huang, Austin Lacey, Norman Delanty, Jane Cryan, Francesca M. Brett, Michael A. Farrell, Donncha F. O’Brien, Pablo M. Casillas-Espinosa, Eva M. Jimenez-Mateos, Jeffrey C. Glennon, Mary Canavan, David C. Henshall, Gary P. Brennan
Justine Mathoux, Marc-Michel Wilson, Sujithra Srinivas, Gabrielle Litovskich, Leticia Villalba Benito, Cindy Tran, Jaideep Kesavan, Aileen Harnett, Theresa Auer, Amaya Sanz-Rodriguez, Mohammad Kh. A.E. Alkhayyat, Mairéad Sullivan, Zining Liu, Yifan Huang, Austin Lacey, Norman Delanty, Jane Cryan, Francesca M. Brett, Michael A. Farrell, Donncha F. O’Brien, Pablo M. Casillas-Espinosa, Eva M. Jimenez-Mateos, Jeffrey C. Glennon, Mary Canavan, David C. Henshall, Gary P. Brennan
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Research Article Cell biology Neuroscience

N6-methyladenosine (m6A) dysregulation contributes to network excitability in temporal lobe epilepsy

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Abstract

Analogous to DNA methylation and protein phosphorylation, it is now well understood that RNA is also subject to extensive processing and modification. N6-methyladenosine (m6A) is the most abundant internal RNA modification and regulates RNA fate in several ways, including stability and translational efficiency. The role of m6A in both experimental and human epilepsy remains unknown. Here, we used transcriptome-wide m6A arrays to obtain a detailed analysis of the hippocampal m6A-ome from both mouse and human epilepsy samples. We combined this with human proteomic analyses and show that epileptic tissue displays disrupted metabolic and autophagic pathways that may be directly linked to m6A processing. Specifically, our results suggest that m6A levels inversely correlate with protein pathway activation. Finally, we show that elevated levels of m6A decrease seizure susceptibility and severity in mice. Together, our findings indicate that m6A represents an additional layer of gene regulation complexity in epilepsy and may contribute to the pathomechanisms that drive the development and maintenance of hyperexcitable brain networks.

Authors

Justine Mathoux, Marc-Michel Wilson, Sujithra Srinivas, Gabrielle Litovskich, Leticia Villalba Benito, Cindy Tran, Jaideep Kesavan, Aileen Harnett, Theresa Auer, Amaya Sanz-Rodriguez, Mohammad Kh. A.E. Alkhayyat, Mairéad Sullivan, Zining Liu, Yifan Huang, Austin Lacey, Norman Delanty, Jane Cryan, Francesca M. Brett, Michael A. Farrell, Donncha F. O’Brien, Pablo M. Casillas-Espinosa, Eva M. Jimenez-Mateos, Jeffrey C. Glennon, Mary Canavan, David C. Henshall, Gary P. Brennan

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Figure 2

m6A regulators are disrupted in resected human TLE tissue compared with controls.

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m6A regulators are disrupted in resected human TLE tissue compared with ...
(A) Colorimetric quantification of m6A from total RNA isolated from hippocampal tissue from controls (n = 10), nonsclerotic TLE samples (NS-TLE, n = 7) and TLE samples with sclerosis (Scl-TLE, n = 7). One-way ANOVA, F = 0.65, P = 0.5321. (B) m6A quantification from control and combined epilepsy samples. Unpaired 2-tailed Student’s t test: t = 0.8223; df = 22; P = 0.4197. (C) Western blot analysis of m6A writer proteins METTL3, METTL14, and WTAP in human TLE tissue and non-epileptic controls as well as densitometric quantification of blots (n = 11–12/group, epilepsy samples combination of Scl and NS). METTL3: Shapiro-Wilk: Ctrl: W = 0.873, P = 0.072; Epilepsy: W = 0.899, P = 0.179; F test P = 0.046; Welch’s t test: P = 0.0001, t = –5.43. METTL14: Shapiro-Wilk Ctrl: P = 0.00005; Epilepsy: P = 0.00089; Mann-Whitney test: U = 28; P = 0.0188. (D) Western blot and densitometric quantification of m6A readers YTHDF1 and 2 from epilepsy samples and matched controls (n = 11–12/group). YTHDF1: Shapiro-Wilk test: Ctrl P = 0.817; Epilepsy P = 0.0002. Mann-Whitney test: U = 40; P = 1.0. YTHDF2: unpaired 2-tailed t test; t = 0.5412, df = 21, P = 0.5941. (E) Quantification by Western blot of m6A erasers FTO and ALKBH5 from human TLE hippocampal tissue and autopsy matched controls (n = 11/12 per group). FTO: Shapiro-Wilk Ctrl: W = 0.8, P = 0.02; Epilepsy: W = 0.8, P = 0.01; Mann-Whitney test: U = 27, P = 0.0156. ALKBH5: Shapiro-Wilk: Ctrl: W = 0.743, P = 0.0023; Epilepsy: W = 0.487, P < 0.0001; Mann-Whitney test: U = 6, P < 0.0001. *P < 0.05, ****P < 0.0001.

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