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An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants
Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes
Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes
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Research Article Genetics Hematology

An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants

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Abstract

Diamond-Blackfan anemia syndrome (DBA) is a ribosomopathy associated with loss-of-function variants in more than 20 ribosomal protein (RP) genes. Here, we report the genetic, functional, and biochemical dissection of 2 multigenerational pedigrees with variants in RPL17, a large ribosomal subunit protein–encoding gene. Affected individuals had clinical features and erythroid proliferation defects consistent with DBA. Further, RPL17/uL22 depletion resulted in anemia and micrognathia in zebrafish larvae, and in vivo complementation studies indicated that RPL17 variants were pathogenic. Lymphoblastoid cell lines (LCLs) derived from patients displayed a ribosomal RNA maturation defect reflecting haploinsufficiency of RPL17. The proteins encoded by RPL17 variants were not incorporated into ribosomes, but 10%–20% of 60S ribosomal subunits contained a short form of 5.8S rRNA (5.8SC), a species that is marginal in normal cells. These atypical 60S subunits were actively engaged in translation. Ribosome profiling showed changes of the translational profile, but those are similar to LCLs bearing RPS19 variants. These results link an additional RP gene to DBA. They show that ribosomes can be modified substantially by RPL17 haploinsufficiency but support the paradigm that translation alterations in DBA are primarily related to insufficient ribosome production rather than to changes in ribosome structure or composition.

Authors

Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes

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Figure 3

Zebrafish models of rpl17 ablation display anemia and craniofacial patterning defects.

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Zebrafish models of rpl17 ablation display anemia and craniofacial patte...
(A) Representative lateral views of gata1:dsRed larvae imaged at 3 days postfertilization (dpf). Fluorescent signal, indicative of erythroid precursors and erythrocytes, was quantified in a consistently sized region of interest (red box) located posterior of the cloaca on the ventral side of controls, F0 mutants, and MO-injected larvae. Anterior, left; posterior, right. (B) Quantification of dsRed+ cells (erythroid cells) in the region of interest (see panel A) in F0 mutant or morphant larvae at 3 dpf. n = 20–40 larvae/batch, repeated at least twice. (C) Representative ventral views of –1.4col1a1:egfp larvae imaged at 4 dpf. Fluorescent signal was assessed for cartilage patterning defects by measuring the angle of the ceratohyal (ch) cartilage (dashed lines). Ceratobranchial (cb) arches were also dysplastic and reduced in number compared with controls. Anterior, left; posterior, right. (D) Quantification of the ch angle in F0 mutant and morphant larvae at 4 dpf; n = 16–32 larvae/batch, repeated at least twice. mRNA encodes predicted proteins p.A73_K105del and p.(T151Rfs*25) corresponding to Family 1 and Family 2, respectively. mRNA coding for p.Q56L is present in public databases (rs753489644; gnomAD browser), and scores as a benign variant in this assay. In panels B and D, ends of the whiskers are set at 1.5 times the interquartile range (IQR) above the third quartile and below the first quartile, respectively. Black dots, minimum and maximum outliers; *P < 0.05; **P < 0.01; **** P < 0.0001; (Kruskal-Wallis with Dunn’s multiple comparisons test).

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