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An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants
Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes
Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes
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Research Article Genetics Hematology

An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants

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Abstract

Diamond-Blackfan anemia syndrome (DBA) is a ribosomopathy associated with loss-of-function variants in more than 20 ribosomal protein (RP) genes. Here, we report the genetic, functional, and biochemical dissection of 2 multigenerational pedigrees with variants in RPL17, a large ribosomal subunit protein–encoding gene. Affected individuals had clinical features and erythroid proliferation defects consistent with DBA. Further, RPL17/uL22 depletion resulted in anemia and micrognathia in zebrafish larvae, and in vivo complementation studies indicated that RPL17 variants were pathogenic. Lymphoblastoid cell lines (LCLs) derived from patients displayed a ribosomal RNA maturation defect reflecting haploinsufficiency of RPL17. The proteins encoded by RPL17 variants were not incorporated into ribosomes, but 10%–20% of 60S ribosomal subunits contained a short form of 5.8S rRNA (5.8SC), a species that is marginal in normal cells. These atypical 60S subunits were actively engaged in translation. Ribosome profiling showed changes of the translational profile, but those are similar to LCLs bearing RPS19 variants. These results link an additional RP gene to DBA. They show that ribosomes can be modified substantially by RPL17 haploinsufficiency but support the paradigm that translation alterations in DBA are primarily related to insufficient ribosome production rather than to changes in ribosome structure or composition.

Authors

Florence Fellmann, Carol Saunders, Marie-Françoise O’Donohue, David W. Reid, Kelsey A. McFadden, Nathalie Montel-Lehry, Cong Yu, Mingyan Fang, Jianguo Zhang, Beryl Royer-Bertrand, Pietro Farinelli, Narjesse Karboul, Jason R. Willer, Lorraine Fievet, Zahurul Alam Bhuiyan, Alissa L.W. Kleinhenz, Julie Jadeau, Joy Fulbright, Carlo Rivolta, Raffaele Renella, Nicholas Katsanis, Jacques S. Beckmann, Christopher V. Nicchitta, Lydie Da Costa, Erica E. Davis, Pierre-Emmanuel Gleizes

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Figure 2

Characterization of erythroid maturation defects in family 1 from cells cultured in vitro.

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Characterization of erythroid maturation defects in family 1 from cells ...
(A) Cell growth curves during erythroid cell differentiation; 1-II-2, 1-II-4, 1-III-3, and 1-III-5 harbor the RPL17 c.217-3C>G variant; 1-II-5 is a healthy control (married-in spouse); D, day of culture. (B) Time course of CD34 and CD36 labelling. FACS analysis at D7 showed no consistent change in the percentage of BFU-e (CD34+/ CD36–) or CFU-e (CD34–/ CD36+) progenitor cells with RPL17 variants. The gradual loss of CD36 labelling from D12 to D15, indicative of terminal differentiation stages, occurred with similar kinetics in cells from both affected and unaffected individuals. Profound cell death of sample 1-III-3 prohibited study beyond D9. (C) Quantification of GPA+ cells (erythroid specific marker) by FACS from D7 to D15. (D) Erythropoietic differentiation was assessed by co-detection of α4-integrin and Band3 in GPA+ cells. Increase in Band3 labelling, a marker of terminal erythroid cells, is paralleled by a decrease of α4-integrin during erythroid differentiation (35). (E) Quantification of the early apoptotic marker, Annexin V from D7 to D15 shows no significant apoptosis in patient-derived cells compared with control cells.

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