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Identification and tracking of HTLV-1–infected T cell clones in virus-associated neurologic disease
Satoshi Nozuma, Eiji Matsuura, Masakazu Tanaka, Daisuke Kodama, Toshio Matsuzaki, Akiko Yoshimura, Yusuke Sakiyama, Shingo Nakahata, Kazuhiro Morishita, Yoshimi Enose-Akahata, Steven Jacoboson, Ryuji Kubota, Hiroshi Takashima
Satoshi Nozuma, Eiji Matsuura, Masakazu Tanaka, Daisuke Kodama, Toshio Matsuzaki, Akiko Yoshimura, Yusuke Sakiyama, Shingo Nakahata, Kazuhiro Morishita, Yoshimi Enose-Akahata, Steven Jacoboson, Ryuji Kubota, Hiroshi Takashima
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Research Article Inflammation Virology

Identification and tracking of HTLV-1–infected T cell clones in virus-associated neurologic disease

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Abstract

Human T lymphotropic virus type 1–assoicated (HTLV-1–associated) myelopathy/tropical spastic paraparesis (HAM/TSP) is a neuroinflammatory disease caused by the persistent proliferation of HTLV-1–infected T cells. Here, we performed a T cell receptor (TCR) repertoire analysis focused on HTLV-1–infected cells to identify and track the infected T cell clones that are preserved in patients with HAM/TSP and migrate to the CNS. TCRβ repertoire analysis revealed higher clonal expansion in HTLV-1–infected cells compared with noninfected cells from patients with HAM/TSP and asymptomatic carriers (ACs). TCR clonality in HTLV-1–infected cells was similar in patients with HAM/TSP and ACs. Longitudinal analysis showed that the TCR repertoire signature in HTLV-1–infected cells remained stable, and highly expanded infected clones were preserved within each patient with HAM/TSP over years. Expanded HTLV-1–infected clones revealed different distributions between cerebrospinal fluid (CSF) and peripheral blood and were enriched in the CSF of patients with HAM/TSP. Cluster analysis showed similarity in TCRβ sequences in HTLV-1–infected cells, suggesting that they proliferate after common antigen stimulation. Our results indicate that exploring TCR repertoires of HTLV-1–infected cells can elucidate individual clonal dynamics and identify potential pathogenic clones expanded in the CNS.

Authors

Satoshi Nozuma, Eiji Matsuura, Masakazu Tanaka, Daisuke Kodama, Toshio Matsuzaki, Akiko Yoshimura, Yusuke Sakiyama, Shingo Nakahata, Kazuhiro Morishita, Yoshimi Enose-Akahata, Steven Jacoboson, Ryuji Kubota, Hiroshi Takashima

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Figure 1

Clonal expansion of TCRβ repertoire in HTLV-1–infected cells of patients with HAM/TSP and ACs.

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Clonal expansion of TCRβ repertoire in HTLV-1–infected cells of patients...
(A) Gating strategy for flow cytometry sorting of CADM1+CD4+ and CADM1–CD4+ T cells from PBMCs samples. (B) Representative examples of T cell clonal expansion in CADM1–CD4+ and CADM1+CD4+ T cells of an AC (AC-1) and a HAM/TSP patient (HAM8). Clonal expansion of TCRβ repertoire is classified by the frequencies of clones ≥ 8 UMIs (color wedges), clones with 2 ≤ UMIs < 8 (gray), and singletons (white). In the group of expanded clones, each wedge exhibits a unique clonotype with a defined CDR3 sequence, and the identical clones shared by CADM1–CD4+ and CADM1+CD4+ T cells in each individual are depicted in the same color. (C and D) Comparison of T cell clonal expansion by frequency of clones ≥ 8 UMIs (C) and Shannon diversity (D) between CADM1–CD4+ and CADM1+CD4+ T cells from ACs (n = 5) and patients with HAM/TSP (n = 12) using Wilcoxon signed-rank test. ***P < 0.001, ****P < 0.0001.

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