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An RPS19-edited model for Diamond-Blackfan anemia reveals TP53-dependent impairment of hematopoietic stem cell activity
Senthil Velan Bhoopalan, Jonathan S. Yen, Thiyagaraj Mayuranathan, Kalin D. Mayberry, Yu Yao, Maria Angeles Lillo Osuna, Yoonjeong Jang, Janaka S.S. Liyanage, Lionel Blanc, Steven R. Ellis, Marcin W. Wlodarski, Mitchell J. Weiss
Senthil Velan Bhoopalan, Jonathan S. Yen, Thiyagaraj Mayuranathan, Kalin D. Mayberry, Yu Yao, Maria Angeles Lillo Osuna, Yoonjeong Jang, Janaka S.S. Liyanage, Lionel Blanc, Steven R. Ellis, Marcin W. Wlodarski, Mitchell J. Weiss
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Research Article Hematology Stem cells

An RPS19-edited model for Diamond-Blackfan anemia reveals TP53-dependent impairment of hematopoietic stem cell activity

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Abstract

Diamond-Blackfan anemia (DBA) is a genetic blood disease caused by heterozygous loss-of-function mutations in ribosomal protein (RP) genes, most commonly RPS19. The signature feature of DBA is hypoplastic anemia occurring in infants, although some older patients develop multilineage cytopenias with bone marrow hypocellularity. The mechanism of anemia in DBA is not fully understood and even less is known about the pancytopenia that occurs later in life, in part because patient hematopoietic stem and progenitor cells (HSPCs) are difficult to obtain, and the current experimental models are suboptimal. We modeled DBA by editing healthy human donor CD34+ HSPCs with CRISPR/Cas9 to create RPS19 haploinsufficiency. In vitro differentiation revealed normal myelopoiesis and impaired erythropoiesis, as observed in DBA. After transplantation into immunodeficient mice, bone marrow repopulation by RPS19+/− HSPCs was profoundly reduced, indicating hematopoietic stem cell (HSC) impairment. The erythroid and HSC defects resulting from RPS19 haploinsufficiency were partially corrected by transduction with an RPS19-expressing lentiviral vector or by Cas9 disruption of TP53. Our results define a tractable, biologically relevant experimental model of DBA based on genome editing of primary human HSPCs and they identify an associated HSC defect that emulates the pan-hematopoietic defect of DBA.

Authors

Senthil Velan Bhoopalan, Jonathan S. Yen, Thiyagaraj Mayuranathan, Kalin D. Mayberry, Yu Yao, Maria Angeles Lillo Osuna, Yoonjeong Jang, Janaka S.S. Liyanage, Lionel Blanc, Steven R. Ellis, Marcin W. Wlodarski, Mitchell J. Weiss

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Figure 2

RPS19+/– CD34+ HSPCs exhibit a selective erythroid defect.

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RPS19+/– CD34+ HSPCs exhibit a selective erythroid defect.
A total of 1...
A total of 1 × 106 healthy donor CD34+ HSPCs were electroporated with 0.04 mg/mL Cas9-3×NLS plus AAVS1 (as control) or RPS19.1 sgRNA on day −3, transduced with RPS19 LV on day −2, and switched to erythroid or myeloid medium on day 0. (A) Total live cell number versus time in erythroid culture. Each data point represents the mean ± SD of 3 biological replicate studies with different CD34+ cell donors. Asterisks indicate significant differences between RPS19 RNP–treated cells and either AAVS1 RNP–treated cells or RPS19 RNP–treated cells rescued with RPS19 LV. (B) Live cell number versus time in myeloid culture, shown as described for A. (C) A total of 500–1000 CD34+ cells were seeded into 1 mL of methylcellulose medium with erythroid cytokines. Burst-forming unit–erythroid (BFU-E) colonies were enumerated 14 days later. (D) Granulocyte-macrophage colony–forming units (CFU-GMs) per 1000 CD34+ cells seeded as described in C. (E) Images of representative BFU‑E colonies generated after treatment with AAVS1 or RPS19 RNPs. The images were captured using a Nikon DS QI2 camera on a Nikon Eclipse NI microscope. Scale bars: 50 μm. (F) Genotype distributions for BFU-E colonies generated by RPS19-edited CD34+ HSPCs with and without gene rescue with RPS19 LV. n = total colonies analyzed from biological replicate experiments using 4 different CD34+ HSPC donors. Bar charts show the mean ± SD of each genotype, with each symbol representing data from different CD34+ cell donors. ***P < 0.001; ****P < 0.0001 by linear mixed-effects model (A) or unpaired, 2-tailed Student’s t test (C and D). P values were adjusted for multiple comparison in C and D by the Holm-Bonferroni method. NS, not significant.

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