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An RPS19-edited model for Diamond-Blackfan anemia reveals TP53-dependent impairment of hematopoietic stem cell activity
Senthil Velan Bhoopalan, … , Marcin W. Wlodarski, Mitchell J. Weiss
Senthil Velan Bhoopalan, … , Marcin W. Wlodarski, Mitchell J. Weiss
Published November 22, 2022
Citation Information: JCI Insight. 2023;8(1):e161810. https://doi.org/10.1172/jci.insight.161810.
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Research Article Hematology Stem cells

An RPS19-edited model for Diamond-Blackfan anemia reveals TP53-dependent impairment of hematopoietic stem cell activity

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Abstract

Diamond-Blackfan anemia (DBA) is a genetic blood disease caused by heterozygous loss-of-function mutations in ribosomal protein (RP) genes, most commonly RPS19. The signature feature of DBA is hypoplastic anemia occurring in infants, although some older patients develop multilineage cytopenias with bone marrow hypocellularity. The mechanism of anemia in DBA is not fully understood and even less is known about the pancytopenia that occurs later in life, in part because patient hematopoietic stem and progenitor cells (HSPCs) are difficult to obtain, and the current experimental models are suboptimal. We modeled DBA by editing healthy human donor CD34+ HSPCs with CRISPR/Cas9 to create RPS19 haploinsufficiency. In vitro differentiation revealed normal myelopoiesis and impaired erythropoiesis, as observed in DBA. After transplantation into immunodeficient mice, bone marrow repopulation by RPS19+/− HSPCs was profoundly reduced, indicating hematopoietic stem cell (HSC) impairment. The erythroid and HSC defects resulting from RPS19 haploinsufficiency were partially corrected by transduction with an RPS19-expressing lentiviral vector or by Cas9 disruption of TP53. Our results define a tractable, biologically relevant experimental model of DBA based on genome editing of primary human HSPCs and they identify an associated HSC defect that emulates the pan-hematopoietic defect of DBA.

Authors

Senthil Velan Bhoopalan, Jonathan S. Yen, Thiyagaraj Mayuranathan, Kalin D. Mayberry, Yu Yao, Maria Angeles Lillo Osuna, Yoonjeong Jang, Janaka S.S. Liyanage, Lionel Blanc, Steven R. Ellis, Marcin W. Wlodarski, Mitchell J. Weiss

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Figure 1

Cas9 disruption of the RPS19 gene in CD34+ HSPCs.

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Cas9 disruption of the RPS19 gene in CD34+ HSPCs.
(A) Diagram of RPS19, ...
(A) Diagram of RPS19, including exons 1–6, with coding regions in a darker shade. Arrows show regions targeted by 3 single-guide RNAs (sgRNAs). (B) Experimental protocol for the in vitro studies in Figures 1–3. On day −3, healthy donor CD34+ HSPCs were edited by electroporation with ribonucleoprotein (RNP) complex consisting of Cas9-3×NLS plus sgRNAs targeting AAVS1 (as a control) or RPS19. In some experiments, cells were transduced with an RPS19-expressing or control lentiviral vector (LV) on day −2. The frequency of on-target insertion-deletion (indel) mutations was determined by next-generation sequencing (NGS) on day 0, and cells were switched to medium containing cytokines for erythroid (EPO, SCF, IL-3) or myeloid (SCF, TPO, G-CSF, GM-CSF) differentiation. (C) Indel frequency versus time in erythroid medium. (D) Northern blot analysis of RNA from gene-edited HSPCs using ITS1 probe. (E) Indel frequency versus time in myeloid medium. (F) RPS19 indel frequency on days 0 and 14 of erythroid and myeloid culture, from C and E. Data represent a total of 18 experiments for erythroid differentiation and 9 experiments for myeloid differentiation, using 3 different sgRNAs and 3 different CD34+ cell donors. (G) CD34+ HSPCs (1 × 106) were edited with 0.4 or 0.04 mg/mL RNP (Cas9 component) containing AAVS1 or RPS19.1 sgRNA. Three days later (day 0), live cells were quantified with a NucleoCounter NC-200 automated cytometer (ChemoMetec). (H) Burst-forming unit–erythroid (BFU-E) colonies per 1000 CD34+ HSPCs. All bar charts show the data as the mean ± SD, with each symbol representing data from different CD34+ cell donors. *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001 (unpaired, 2-tailed Student’s t test). P values were adjusted for multiple comparison in F, G, and H by the Holm-Bonferroni method.

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