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Genome-wide suppressor screen identifies USP35/USP38 as therapeutic candidates for ciliopathies
I-Chun Tsai, Kevin A. Adams, Joyce A. Tzeng, Omar Shennib, Perciliz L. Tan, Nicholas Katsanis
I-Chun Tsai, Kevin A. Adams, Joyce A. Tzeng, Omar Shennib, Perciliz L. Tan, Nicholas Katsanis
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Research Article Genetics Therapeutics

Genome-wide suppressor screen identifies USP35/USP38 as therapeutic candidates for ciliopathies

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Abstract

The ciliopathies are a group of phenotypically overlapping disorders caused by structural or functional defects in the primary cilium. Although disruption of numerous signaling pathways and cellular trafficking events have been implicated in ciliary pathology, treatment options for affected individuals remain limited. Here, we performed a genome-wide RNAi (RNA interference) screen to identify genetic suppressors of BBS4, one of the genes mutated in Bardet-Biedl syndrome (BBS). We discovered 10 genes that, when silenced, ameliorate BBS4-dependent pathology. One of these encodes USP35, a negative regulator of the ubiquitin proteasome system, suggesting that inhibition of a deubiquitinase, and subsequent facilitation of the clearance of signaling components, might ameliorate BBS-relevant phenotypes. Testing of this hypothesis in transient and stable zebrafish genetic models showed this posit to be true; suppression or ablation of usp35 ameliorated hallmark ciliopathy defects including impaired convergent extension (CE), renal tubule convolution, and retinal degeneration with concomitant clearance of effectors such as β-catenin and rhodopsin. Together, our findings reinforce a direct link between proteasome-dependent degradation and ciliopathies and suggest that augmentation of this system might offer a rational path to novel therapeutic modalities.

Authors

I-Chun Tsai, Kevin A. Adams, Joyce A. Tzeng, Omar Shennib, Perciliz L. Tan, Nicholas Katsanis

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Figure 2

Suppression of usp38 (USP35 ortholog in zebrafish) ameliorates the defects caused by depletion of bbs4.

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Suppression of usp38 (USP35 ortholog in zebrafish) ameliorates the defec...
(A) Morpholinos were injected as described in the Methods. Depletion of bbs4 results in CE defects, including wider anterior-posterior body gap, somite, and loss of eyes (mostly in Class II). To quantitatively determine the CE phenotype, the angle of body gap was measured in each embryo, and the embryos were classified as described in Methods. Coinjection of usp38-MO reduces both Class I and Class II embryos. Arrowheads represent the tip of anterior and posterior body axis. Brackets represent the width of somite. (χ2 analysis, *P < 0.05, ****P < 0.0001). (B) Depletion of bbs4 leads to the atrophy and deficient convolution in the proximal tubules, a phenotype that is related to cyst formation. Knockdown of usp38 expression ameliorates renal defects seen in bbs4 morphants (χ2 analysis, ***P < 0.001). Scale bar: 100 μm. (C) While bbs4 CRISPR (mosaic) mutant exhibit defects in the convolution of proximal tubules, deletion of usp38 ameliorates these defects (χ2 analysis, **P < 0.01, ****P < 0.0001).

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