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Rare variable M. tuberculosis antigens induce predominant Th17 responses in human infection
Paul Ogongo, Liya Wassie, Anthony Tran, Devin Columbus, Julia Huffaker, Lisa Sharling, Gregory Ouma, Samuel Gurrion Ouma, Kidist Bobosha, Cecilia S. Lindestam Arlehamn, Neel R. Gandhi, Sara C. Auld, Jyothi Rengarajan, Cheryl L. Day, Artur Queiroz, Mariana Araújo-Pereira, Eduardo Fukutani, Bruno B. Andrade, John D. Altman, Henry M. Blumberg, Joel D. Ernst, the TBRU ASTRa Study Group
Paul Ogongo, Liya Wassie, Anthony Tran, Devin Columbus, Julia Huffaker, Lisa Sharling, Gregory Ouma, Samuel Gurrion Ouma, Kidist Bobosha, Cecilia S. Lindestam Arlehamn, Neel R. Gandhi, Sara C. Auld, Jyothi Rengarajan, Cheryl L. Day, Artur Queiroz, Mariana Araújo-Pereira, Eduardo Fukutani, Bruno B. Andrade, John D. Altman, Henry M. Blumberg, Joel D. Ernst, the TBRU ASTRa Study Group
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Clinical Research and Public Health Immunology Infectious disease Microbiology

Rare variable M. tuberculosis antigens induce predominant Th17 responses in human infection

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Abstract

CD4 T cells are essential for immunity to M tuberculosis (Mtb), and emerging evidence indicates that IL-17–producing Th17 cells contribute to immunity to Mtb. While identifying protective T cell effector functions is important for TB vaccine design, T cell antigen specificity is also likely to be important. To identify antigens that induce protective immunity, we reasoned that, as in other pathogens, effective immune recognition drives sequence diversity in individual Mtb antigens. We previously identified Mtb genes under evolutionary diversifying selection pressure whose products we term Rare Variable Mtb Antigens (RVMA). Here, in 2 distinct human cohorts with recent exposure to TB, we found that RVMA preferentially induce CD4 T cells that express RoRγt and produce IL-17, in contrast to “classical” Mtb antigens that induce T cells that produce IFN-γ. Together with emerging evidence showing human Th17 responses are associated with prevention of progression to TB disease, our results suggest that RVMA can be valuable antigens in vaccines for those already infected with Mtb to amplify existing antigen-specific Th17 responses to prevent TB disease.

Authors

Paul Ogongo, Liya Wassie, Anthony Tran, Devin Columbus, Julia Huffaker, Lisa Sharling, Gregory Ouma, Samuel Gurrion Ouma, Kidist Bobosha, Cecilia S. Lindestam Arlehamn, Neel R. Gandhi, Sara C. Auld, Jyothi Rengarajan, Cheryl L. Day, Artur Queiroz, Mariana Araújo-Pereira, Eduardo Fukutani, Bruno B. Andrade, John D. Altman, Henry M. Blumberg, Joel D. Ernst, the TBRU ASTRa Study Group

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Figure 4

RVMA are enriched for nonclassical Th1 or Th17 responses.

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RVMA are enriched for nonclassical Th1 or Th17 responses.
(A–H) Comparis...
(A–H) Comparison of RVMA and classical antigen-specific antigens marker profile in Cohort 1 (A–D) and Cohort 2 (E–H). A, C, E, and G show random forest feature selection analysis results. The y axis shows the variable names ordered by the Mean Decrease Gini. The x axis is displaying the Mean Decrease Gini values, while the color represents the Mean decrease in Accuracy. B, D, F, and H show box and whisker plots from the most informative variables identified by the random forest algorithm. The y axis shows the variable abundance value transformed in log10, while the x axis and colors display the antigen groups or antigen identity. Group comparison was performed with the Wilcoxon test, and P values were adjusted by FDR.

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