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Perturbation of the preterm human immune system in early life
Benjamin A. Fensterheim, Michelle L. McKeague, Divij Mathew, Shwetank, Ajinkya Pattekar, Matthew Lee, Zahabia Rangwala, Sean Nasta, Macy C. Kee, Cynthia Clendenin, Zachary Martinez, Caroline Diorio, Allison R. Greenplate, Krithika Lingappan, E. John Wherry
Benjamin A. Fensterheim, Michelle L. McKeague, Divij Mathew, Shwetank, Ajinkya Pattekar, Matthew Lee, Zahabia Rangwala, Sean Nasta, Macy C. Kee, Cynthia Clendenin, Zachary Martinez, Caroline Diorio, Allison R. Greenplate, Krithika Lingappan, E. John Wherry
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Research Article Development Immunology Inflammation

Perturbation of the preterm human immune system in early life

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Abstract

Although inflammatory complications are common in preterm infants, the effects of these conditions on neonatal immune development remain poorly defined. We therefore investigated whether severe bronchopulmonary dysplasia (BPD) and systemic infection, 2 major complications of prematurity, produce distinct immune signatures and change immune composition over time. We performed longitudinal high-dimensional immune profiling of residual whole blood from 38 preterm infants sampled every 2 weeks, along with 10 term infants at birth. Preterm infants with severe BPD showed a progressive increase in Th17-polarized CD4+ T cells, neutrophils, and Th17-related cytokines compared with age-matched infants with moderate BPD. In contrast, some preterm infants with systemic bacterial or viral infections mounted exceptionally robust CD8+, CD4+, and γδ T cell responses, with oligoclonal expansion, terminal differentiation, and coordinated plasma cytokine shifts that persisted well beyond resolution of infection. These findings demonstrate that different preterm comorbidities imprint the neonatal immune system in divergent ways. Thus, comprehensive and longitudinal immune profiling may not only identify connections between clinical inflammatory complications and underlying immune pathways but also reveal potential targets for intervention.

Authors

Benjamin A. Fensterheim, Michelle L. McKeague, Divij Mathew, Shwetank, Ajinkya Pattekar, Matthew Lee, Zahabia Rangwala, Sean Nasta, Macy C. Kee, Cynthia Clendenin, Zachary Martinez, Caroline Diorio, Allison R. Greenplate, Krithika Lingappan, E. John Wherry

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Figure 6

Massive first-in-life T cell reaction is oligoclonal.

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Massive first-in-life T cell reaction is oligoclonal.
TCR-seq analysis o...
TCR-seq analysis of select samples from infants with a T cell reaction. Information from each sample can be seen as a subcolumn under the infant from which it was derived. (A) The productive Simpson clonality index of each sample. (B) The frequency of specific TCRs that were found to have greater than 3 clonotypes within the sample. Each color represents a unique TCR sequence. Alluvia connecting the colors between samples represent the same TCR sequence that was found in both samples. (C) The occupied repertoire score, which is the percent of the sample that is dominated by TCRs of a given clonotype count. (D) The distribution of CDR3 lengths of TCRs within each clonotype count bin. All samples are grouped. (E) N1 and N2 insertions among each unique TCR within each clonotype count bin. Zoomed in means for each group in graph inset. All samples are grouped. BH-adjusted *P < 0.05 via Kruskal-Wallis test with post hoc Dunn’s test.

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