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Hypomorphic Lig4 gene mutation in mice predisposes to Th1-skewed intestinal inflammation
Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho
Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho
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Research Article Immunology Inflammation

Hypomorphic Lig4 gene mutation in mice predisposes to Th1-skewed intestinal inflammation

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Abstract

DNA ligase IV (LIGIV or LIG4) is essential for DNA double-strand break (DSB) repair. Hypomorphic LIG4 variants cause LIG4 syndrome, characterized by growth disturbance, increased radiosensitivity, predisposition to malignancies, adaptive immunodeficiency, and inflammatory conditions. Most of these manifestations are recapitulated in hypomorphic Lig4 mutant mice. However, no model mice with defective DSB repair have consistently exhibited inflammation. Here, we generated mutant mice carrying the LIG4 missense variant, p.W447C, found in a patient with LIG4 syndrome. Lig4W447C/W447C mice showed functional defects of LIGIV and manifested growth retardation, increased radiosensitivity, and life-threatening intestinal inflammation under severe adaptive immunodeficiency. The inflammation was dependent on lymphocytes and characterized by marked infiltration of Th1 cells and macrophages, along with elevated expression of IFN-γ–inducible genes. When Ifng was deleted, Th2 and Th17 instead of Th1 cells drove the inflammation. Single-cell RNA-seq analyses with TCR repertoire revealed that T cells from Lig4W447C/W447C mice preferentially used proximal Vα and Jα segments in V regions of TCRα chains and exhibited expansion of several clonotypes, a substantial portion of which were CD4+ T cells expressing IFN-γ. Thus, our hypomorphic Lig4 mutant mice represent a unique model for studying Th1-skewed intestinal inflammation under severe adaptive immunodeficiency.

Authors

Yusuke Yamashita, Hideki Kosako, Takashi Kato, Izumi Sasaki, Sadahiro Iwabuchi, Yuri Fukuda-Ohta, Tadashi Okamura, Misato Tane, Shotaro Tabata, Kazutaka Nakashima, Ken Tanaka, Kazunori Shiraishi, Yuki Uchihara, Daisuke Okuzaki, Kyoichi Isono, Atsushi Shibata, Tsunehiro Mizushima, Hiroaki Hemmi, Nobuo Kanazawa, Seiji Kodama, Hiroaki Miyoshi, Koichi Ohshima, Shinichi Hashimoto, Yoshio Fujitani, Takashi Sonoki, Shinobu Tamura, Tsuneyasu Kaisho

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Figure 6

Single-cell RNA-seq of splenocyte samples.

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Single-cell RNA-seq of splenocyte samples.
(A) The t-distributed stochas...
(A) The t-distributed stochastic neighbor embedding (t-SNE) plots of splenocytes from Lig4+/+ and Lig4W447C/W447C mice based on 17,377 cells (Lig4+/+, 5,289 cells; Lig4W447C/W447C, 12,088 cells). Splenocytes were classified into 24 clusters. t-SNE plots show the data of total (left), Lig4+/+ (middle), and Lig4W447C/W447C (right). Cells are grouped into 6 major cell populations: T cells, B-lineage cells, myeloid cells, erythroid cells, mast cells, and unclassified cells. A detailed cluster annotation is shown in Supplemental Figure 11. (B) Feature plots of Cd3e, Cd4, Tbx21, and Ifng. The color bar, from yellow to brown, reveals gradual expression intensity differences from low to high. (C) The clonotype frequencies of splenocytes from Lig4+/+ mice and Lig4W447C/W447C mice (n = 3; experiments [exp] 1, 2, and 3). (D) Violin plots of the expression of the listed gene in the respective clonotype of each Lig4W447C/W447C mouse (n = 3; experiments 1, 2, and 3). (E) Clonotype summary of each Lig4W447C/W447C mouse (n = 3; experiments 1, 2, and 3).

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