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Comparative analysis of adenovirus, mRNA, and protein vaccines reveals context-dependent immunogenicity and efficacy
Bakare Awakoaiye, Shiyi Li, Sarah Sanchez, Tanushree Dangi, Nahid Irani, Laura Arroyo, Gabriel Arellano, Shadi Mohammadabadi, Malika Aid, Pablo Penaloza-MacMaster
Bakare Awakoaiye, Shiyi Li, Sarah Sanchez, Tanushree Dangi, Nahid Irani, Laura Arroyo, Gabriel Arellano, Shadi Mohammadabadi, Malika Aid, Pablo Penaloza-MacMaster
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Research Article Immunology Infectious disease

Comparative analysis of adenovirus, mRNA, and protein vaccines reveals context-dependent immunogenicity and efficacy

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Abstract

Despite the widespread use of adenovirus, mRNA, and protein-based vaccines during the COVID-19 pandemic, their relative immunological profiles and protective efficacies remain incompletely defined. Here, we compared antigen kinetics, innate and adaptive immune responses, and protective efficacy following Ad5, mRNA, and protein vaccination in mice. Ad5 induced the most sustained antigen expression, but mRNA induced the most potent IFN responses, associated with robust antigen presentation and costimulation. Unlike Ad5 vaccines, which were hindered by preexisting vector immunity, mRNA vaccines retained efficacy after repeated use. As a single-dose regimen, Ad5 vaccines elicited higher immune responses. However, as a prime-boost regimen, and particularly in Ad5 seropositive mice, mRNA vaccines were more immunogenic than the other vaccine platforms. These findings highlight strengths of each vaccine platform and underscore the importance of host serostatus in determining optimal vaccine performance.

Authors

Bakare Awakoaiye, Shiyi Li, Sarah Sanchez, Tanushree Dangi, Nahid Irani, Laura Arroyo, Gabriel Arellano, Shadi Mohammadabadi, Malika Aid, Pablo Penaloza-MacMaster

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Figure 3

scRNA-Seq analyses reveal enrichment in IFN pathways and viral sensing pathways in mice vaccinated with mRNA.

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scRNA-Seq analyses reveal enrichment in IFN pathways and viral sensing p...
(A) Experimental outline for gene expression analysis of immune cells (CD45+) from draining lymph nodes. C57BL/6 mice were immunized intramuscularly with each respective vaccine, and at 24 h after immunization, draining lymph nodes were enriched for CD45+ cells using magnetic beads. (B) Venn diagram showing the overlap of significant differentially expressed genes (DEGs) among each vaccine group compared with naive controls. Significance was defined as FDR < 0.05 and absolute log2 fold change > 0.5. (C) Bar plot depicting the proportions of annotated cell types in each vaccination group. (D) UMAP visualization of single-cell transcriptomes, with cells colored and labeled by cell identity. UMAPs are shown separately for each vaccination group. (E–G) Volcano plots displaying DEGs for Ad5 versus naive, mRNA versus naive, and protein versus naive comparisons. Vertical lines indicate log2 fold change of 0.5; horizontal lines indicate FDR of 0.05. Genes upregulated in the vaccine group are shown in red, downregulated in blue, and nonsignificant genes in gray. Other data for this analysis are shown in Supplemental Figure 1. Data are from lymph nodes from 5 mice per group (10 lymph nodes/group).

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