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Extracellular matrix alterations in chronic ischemic cardiomyopathy revealed by quantitative proteomics
Kevin M. Buck, Holden T. Rogers, Zachery R. Gregorich, Morgan W. Mann, Timothy J. Aballo, Zhan Gao, Emily A. Chapman, Andrew J. Perciaccante, Scott J. Price, Ienglam Lei, Paul C. Tang, Ying Ge
Kevin M. Buck, Holden T. Rogers, Zachery R. Gregorich, Morgan W. Mann, Timothy J. Aballo, Zhan Gao, Emily A. Chapman, Andrew J. Perciaccante, Scott J. Price, Ienglam Lei, Paul C. Tang, Ying Ge
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Research Article Cardiology Genetics

Extracellular matrix alterations in chronic ischemic cardiomyopathy revealed by quantitative proteomics

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Abstract

Ischemic cardiomyopathy (ICM) is a leading cause of heart failure characterized by extensive remodeling of the cardiac extracellular matrix (ECM). While initially adaptive, ECM deposition following ischemic injury eventually turns maladaptive, promoting adverse cardiac remodeling. The strong link between the extent of fibrosis and adverse clinical outcomes has led to growing interest in ECM-targeted therapies to prevent or reverse maladaptive cardiac remodeling in ICM; yet, the precise composition of the ECM in ICM remains poorly defined. In this study, we employed sequential protein extraction enabled by the photocleavable surfactant Azo to enrich ECM proteins from left ventricular tissues of patients with end-stage ICM and nonfailing donor hearts. High-resolution mass spectrometry–based quantitative proteomics identified and quantified over 6,000 unique protein groups, including 315 ECM proteins. We discovered significant upregulation of key ECM components, particularly glycoproteins, proteoglycans, collagens, and ECM regulators. Notably, LOXL1, FBLN1, and VCAN were among the most differentially expressed. Functional enrichment analyses revealed enhanced TGFB signaling, integrin-mediated adhesion, and complement activation in ICM tissues, suggesting a feedback loop driving continued ECM deposition in the end-stage failing heart. Together, our findings provide a comprehensive proteomic landscape of ECM alterations in the end-stage ICM myocardium and identify promising molecular targets for therapeutic intervention.

Authors

Kevin M. Buck, Holden T. Rogers, Zachery R. Gregorich, Morgan W. Mann, Timothy J. Aballo, Zhan Gao, Emily A. Chapman, Andrew J. Perciaccante, Scott J. Price, Ienglam Lei, Paul C. Tang, Ying Ge

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Figure 2

Global proteomics results from ECM-enriched extract reveals alterations in failing ICM versus nonfailing donor myocardium.

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Global proteomics results from ECM-enriched extract reveals alterations ...
(A) PCA shows clustering and clear separation of failing ICM and nonfailing donor group replicates. The ellipse represents the 95% confidence interval of the data assuming a multivariate normal distribution. (B) Heatmap of Z-scored protein intensities (top 300 most significant differentially expressed) shows clusters (k-means) of proteins up- and downregulated in failing ICM versus nonfailing control myocardium. (C) Bubble plots showing GO terms enriched among protein clusters up- (black) and downregulated (gray) in end-stage failing ICM compared with nonfailing control. Enriched cellular component terms (left) highlight up- and downregulation of ECM and mitochondrial proteins, respectively, in failing ICM compared with nonfailing control myocardium. Similarly, biological process terms (right) enriched among proteins upregulated in the failing ICM myocardium pertained to ECM organization and complement activation while those enriched among downregulated proteins were concerned with metabolic processes. FDR is P value–corrected by the Benjamini-Hochberg method, done automatically by STRING.

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