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Extracellular matrix alterations in chronic ischemic cardiomyopathy revealed by quantitative proteomics
Kevin M. Buck, … , Paul C. Tang, Ying Ge
Kevin M. Buck, … , Paul C. Tang, Ying Ge
Published September 30, 2025
Citation Information: JCI Insight. 2025;10(21):e196933. https://doi.org/10.1172/jci.insight.196933.
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Research Article Cardiology Genetics

Extracellular matrix alterations in chronic ischemic cardiomyopathy revealed by quantitative proteomics

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Abstract

Ischemic cardiomyopathy (ICM) is a leading cause of heart failure characterized by extensive remodeling of the cardiac extracellular matrix (ECM). While initially adaptive, ECM deposition following ischemic injury eventually turns maladaptive, promoting adverse cardiac remodeling. The strong link between the extent of fibrosis and adverse clinical outcomes has led to growing interest in ECM-targeted therapies to prevent or reverse maladaptive cardiac remodeling in ICM; yet, the precise composition of the ECM in ICM remains poorly defined. In this study, we employed sequential protein extraction enabled by the photocleavable surfactant Azo to enrich ECM proteins from left ventricular tissues of patients with end-stage ICM and nonfailing donor hearts. High-resolution mass spectrometry–based quantitative proteomics identified and quantified over 6,000 unique protein groups, including 315 ECM proteins. We discovered significant upregulation of key ECM components, particularly glycoproteins, proteoglycans, collagens, and ECM regulators. Notably, LOXL1, FBLN1, and VCAN were among the most differentially expressed. Functional enrichment analyses revealed enhanced TGFB signaling, integrin-mediated adhesion, and complement activation in ICM tissues, suggesting a feedback loop driving continued ECM deposition in the end-stage failing heart. Together, our findings provide a comprehensive proteomic landscape of ECM alterations in the end-stage ICM myocardium and identify promising molecular targets for therapeutic intervention.

Authors

Kevin M. Buck, Holden T. Rogers, Zachery R. Gregorich, Morgan W. Mann, Timothy J. Aballo, Zhan Gao, Emily A. Chapman, Andrew J. Perciaccante, Scott J. Price, Ienglam Lei, Paul C. Tang, Ying Ge

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Figure 1

Azo-enabled ECM proteomics method yields reproducible coverage of the matrisome (the collection of proteins in the ECM) in failing ICM and nonfailing donor heart tissues.

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Azo-enabled ECM proteomics method yields reproducible coverage of the ma...
(A) Schematic representation of the workflow for MS-based proteomic analysis of protein extracts from human ICM and donor patient myocardial tissue. Soluble proteins are depleted in the first LiCl extraction (LiCl) followed by solubilization of “insoluble” ECM proteins by extraction with buffer containing the photocleavable surfactant, Azo. (B) CVs of protein intensities across extracts from failing ICM and nonfailing donor tissues. The median CV of protein intensities was below 5% for extracts from both groups, indicating high quantitative reproducibility. CVs were calculated by (SD/mean intensity) × 100% for each quantified value in each replicate. (C) Upset plot and bar graph (inset) showing more than 6,000 unique protein identifications overall, as well as the degree of overlap between groups. (D and E) Simplified depiction of major categories of ECM proteins (per MatrisomeDB, ref. 25) (D) and breakdown of the number of proteins in each category identified in this study (E). The inner circle shows the total number of proteins in each category while the outer circle indicates those that were identified herein. Black segments correspond to proteins present in MatrisomeDB (25) that were not identified in human ICM and donor myocardial tissue.

Copyright © 2025 American Society for Clinical Investigation
ISSN 2379-3708

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