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High-throughput screens identify genotype-specific therapeutics for channelopathies
Christian L. Egly, Alex Shen, Tri Q. Do, Carlos Tellet Cabiya, Paxton A. Ritschel, Suah Woo, Matthew Ku, Brian P. Delisle, Brett M. Kroncke, Björn C. Knollmann
Christian L. Egly, Alex Shen, Tri Q. Do, Carlos Tellet Cabiya, Paxton A. Ritschel, Suah Woo, Matthew Ku, Brian P. Delisle, Brett M. Kroncke, Björn C. Knollmann
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Research Article Cardiology Genetics

High-throughput screens identify genotype-specific therapeutics for channelopathies

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Abstract

Genetic diseases such as ion channelopathies substantially burden human health. Existing treatments are limited and not genotype specific. Here, we report a 2-step high-throughput approach to rapidly identify drug candidates for repurposing as genotype-specific therapy. We first screened 1,680 medicines using a thallium-flux trafficking assay against Kv11.1 gene variants causing long QT syndrome (LQTS), an ion channelopathy associated with fatal cardiac arrhythmia. We identified evacetrapib as a suitable drug candidate that improves membrane trafficking and activates channels. We then used deep mutational scanning to prospectively identify all Kv11.1 missense variants in an LQTS hotspot region responsive to treatment with evacetrapib. Combining high-throughput drug screens with deep mutational scanning establishes a paradigm for mutation-specific drug discovery translatable to personalized treatment of carriers with rare genetic disorders.

Authors

Christian L. Egly, Alex Shen, Tri Q. Do, Carlos Tellet Cabiya, Paxton A. Ritschel, Suah Woo, Matthew Ku, Brian P. Delisle, Brett M. Kroncke, Björn C. Knollmann

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Figure 1

Tl+-flux screen of clinically used drugs identifies therapeutics that increase membrane trafficking of Kv11.1 variants.

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Tl+-flux screen of clinically used drugs identifies therapeutics that in...
(A) Western blot showing trafficked (fully glycosylated, ~155 kDa) and non-trafficked (core glycosylated, ~135 kDa) Kv11.1 protein. Twenty-four-hour treatment with E4031 increases trafficking in 2 variants. (B) High-throughput, Tl+-flux trafficking screen in 384-well plates using HEK-293 cells expressing trafficking-deficient Kv11.1 variants plated at 15,000 cells per well. Cells were treated for 22 hours with drug prior to Tl+-flux experiments. Schematic depiction of individual wells treated with vehicle or therapeutic and resulting fluorescence generated via Tl+ ions traversing (Tl+-flux) Kv11.1 potassium channels (black arrows). Tl+ binding to an intracellular indicator (Thallos AM) generates fluorescence. Fluorescence (F) recordings are normalized to baseline fluorescence (F0). Pharmacological chaperone treatment increases Kv11.1 variant trafficking and surface expression, resulting in a larger fluorescence signal (red trace) generated by Tl+ flux. (C) Median robust z scores were calculated by taking the difference of slope between drug-treated (10 μmol/L) wells and the median slope for the same plate [(ΔF/s)drug – (ΔF/s)median] and then dividing by the median absolute deviation (MAD) of that individual plate (see Methods and Supplemental Methods). Dot plots show the results of 1,680 clinically used drugs screened in 2 trafficking-deficient Kv11.1 variants and then grouped by drug class. The median of the robust z score from replicate screens (n = 2–4 wells/drug) is shown with hits designated as median robust z scores ≥3 (dotted red line).

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