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Single-cell transcriptional analysis reveals allergen-specific signatures in human γδ T cells
Kendall Kearns, Sloan A. Lewis, Esther Dawen Yu, Adam Abawi, Eric Wang, Synaida Maiche, Monalisa Mondal, Pandurangan Vijayanand, Grégory Seumois, Bjoern Peters, Alessandro Sette, Ricardo Da Silva Antunes
Kendall Kearns, Sloan A. Lewis, Esther Dawen Yu, Adam Abawi, Eric Wang, Synaida Maiche, Monalisa Mondal, Pandurangan Vijayanand, Grégory Seumois, Bjoern Peters, Alessandro Sette, Ricardo Da Silva Antunes
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Research Article Cell biology Immunology

Single-cell transcriptional analysis reveals allergen-specific signatures in human γδ T cells

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Abstract

The role of gamma-delta T (γδ T) cells in immune responses to common allergens is poorly understood. Here, we utilized single-cell (sc) transcriptomic analysis of allergen-reactive γδ T cells in humans to characterize the transcriptional landscapes and TCR repertoires in response to cockroach (CR) and mouse (MO) allergens. Using a potentially novel activation-induced marker (AIM) assay that allows detection of γδ T cells combined with scRNA sequencing and TCR repertoire analysis, we identified both shared and allergen-specific γδ T cell activation patterns and gene expression profiles. While CR extract activated both Vδ1 and Vδ2 subsets, MO extract primarily stimulated Vδ2 cells. Our analysis revealed allergen-specific clusters with distinct functional signatures, including enhanced inflammatory responses and cytotoxic effector functions in MO-specific γδ T cells and natural killer cell–mediated immunity and IFN-γ signaling in CR-specific populations. Comparison of allergic and nonallergic individuals highlighted differences in gene expression and TCR repertoires, including a higher IFNG expression in the CR-allergic compared with nonallergic cohorts, suggesting that phenotypic and functional differences are associated with γδ T allergen responses. This study provides insights into the cellular and molecular heterogeneity and functionality of allergen-reactive γδ T cells, offering a foundation for understanding their role in allergic diseases and potential therapeutic interventions.

Authors

Kendall Kearns, Sloan A. Lewis, Esther Dawen Yu, Adam Abawi, Eric Wang, Synaida Maiche, Monalisa Mondal, Pandurangan Vijayanand, Grégory Seumois, Bjoern Peters, Alessandro Sette, Ricardo Da Silva Antunes

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Figure 4

CR-specific Vδ1 and Vδ2 clusters are distinct in gene expression and TCR gene usage.

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CR-specific Vδ1 and Vδ2 clusters are distinct in gene expression and TCR...
(A) Heatmap of average scaled expression of the top 50 genes per cluster. Genes listed at left are unique to that specific cluster. (B) Pathway enrichment of genes with a log2 fold-change > 0.5 in each cluster compared with all other clusters (i.e., not solely CR-specific clusters). (C) Volcano plots showing differentially expressed genes between allergic and nonallergic samples stimulated with CR extract for Vδ1 (left) and Vδ2 (right) cells within CR-specific clusters separately. Selected genes annotated. (D) Pathway enrichment of DEGs found upregulated in allergic (top) and nonallergic (bottom) samples for CR-specific Vδ1 (left) and Vδ2 (right) clusters. The number of DEGs out of the total number of genes within each pathway are noted. (E) Proportion of Vδ2 cells with IFNG expression (>1) separated by allergic status (right).

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