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Involvement of lncRNA MIR205HG in idiopathic pulmonary fibrosis and IL-33 regulation via Alu elements
Tsuyoshi Takashima, Chao Zeng, Eitaro Murakami, Naoko Fujiwara, Masaharu Kohara, Hideki Nagata, Zhaozu Feng, Ayako Sugai, Yasue Harada, Rika Ichijo, Daisuke Okuzaki, Satoshi Nojima, Takahiro Matsui, Yasushi Shintani, Gota Kawai, Michiaki Hamada, Tetsuro Hirose, Kazuhiko Nakatani, Eiichi Morii
Tsuyoshi Takashima, Chao Zeng, Eitaro Murakami, Naoko Fujiwara, Masaharu Kohara, Hideki Nagata, Zhaozu Feng, Ayako Sugai, Yasue Harada, Rika Ichijo, Daisuke Okuzaki, Satoshi Nojima, Takahiro Matsui, Yasushi Shintani, Gota Kawai, Michiaki Hamada, Tetsuro Hirose, Kazuhiko Nakatani, Eiichi Morii
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Research Article Inflammation Pulmonology

Involvement of lncRNA MIR205HG in idiopathic pulmonary fibrosis and IL-33 regulation via Alu elements

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Abstract

Idiopathic pulmonary fibrosis (IPF) causes remodeling of the distal lung. Pulmonary remodeling is histologically characterized by fibrosis, as well as appearance of basal cells; however, the involvement of basal cells in IPF remains unclear. Here, we focus on the long noncoding RNA MIR205HG, which is highly expressed in basal cells, using RNA sequencing. Through RNA sequencing of genetic manipulations using primary cells and organoids, we discovered that MIR205HG regulates IL-33 expression. Mechanistically, the AluJb element of MIR205HG plays a key role in IL-33 expression. Additionally, we identified a small molecule that targets the AluJb element, leading to decreased IL-33 expression. IL-33 is known to induce type 2 innate lymphoid cells (ILC2s), and we observed that MIR205HG expression was positively correlated with the number of ILC2s in patients with IPF. Collectively, these findings provide insights into the mechanisms by which basal cells contribute to IPF and suggest potential therapeutic targets.

Authors

Tsuyoshi Takashima, Chao Zeng, Eitaro Murakami, Naoko Fujiwara, Masaharu Kohara, Hideki Nagata, Zhaozu Feng, Ayako Sugai, Yasue Harada, Rika Ichijo, Daisuke Okuzaki, Satoshi Nojima, Takahiro Matsui, Yasushi Shintani, Gota Kawai, Michiaki Hamada, Tetsuro Hirose, Kazuhiko Nakatani, Eiichi Morii

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Figure 5

Overexpression of lncRNA MIR205HG upregulates IL33 mRNA in alveolar organoids.

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Overexpression of lncRNA MIR205HG upregulates IL33 mRNA in alveolar orga...
(A) Schematic of experimental design for identification of MIR205HG-regulated genes in MIR205HG-OE alveolar organoids. (B) qRT-PCR showing MIR205HG expression in negative vector (NV) and MIR205HG-OE alveolar organoids. (C) Representative images of MIR205HG ISH staining in NV and MIR205HG-OE alveolar organoids. Orange arrows indicate MIR205HG signals, which are detected in nuclei (circled by orange dotted line). Scale bar: 20 μm. (D) Quantification of organoid number in NV and MIR205HG-OE alveolar organoids. Scale bar: 1 mm. (E) Volcano plot of DEGs in NV and MIR205HG-OE alveolar organoids. Top 40 DEGs are shown. The IL33 gene is indicated among upregulated genes in MIR205HG-OE alveolar organoids. The cutoff values were log2FC > 2, P < 0.05. (F) qRT-PCR showing IL33 expression in NV and MIR205HG-OE alveolar organoids. (B, D, and F) Data represent mean ± SD. *P < 0.05, **P < 0.01, ***P < 0.001; P values were determined by 2-tailed t test.

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