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PBMC transcriptomic signatures reflect Trypanosoma cruzi strain diversity and trained immunity in chronically infected macaques
Hans Desale, Weihong Tu, Kelly Goff, Preston A. Marx, Claudia Herrera, Eric Dumonteil
Hans Desale, Weihong Tu, Kelly Goff, Preston A. Marx, Claudia Herrera, Eric Dumonteil
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Research Article Infectious disease Microbiology

PBMC transcriptomic signatures reflect Trypanosoma cruzi strain diversity and trained immunity in chronically infected macaques

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Abstract

Chagas disease is a tropical disease caused by Trypanosoma cruzi with clinical presentations ranging from asymptomatic to cardiac and/or gastrointestinal complications. The mechanisms of pathogenesis are still poorly understood, but T. cruzi strain diversity may be associated with disease progression. Therefore, we evaluated the transcriptomic response of PBMCs from macaques with natural chronic infections and tested for heterogeneity in their gene signatures. Remarkably, transcriptomic response to T. cruzi infection matched parasite strain profiles, indicating that parasite diversity is a key determinant of host response. While differences in adaptive immune responses were identified, more striking alterations of innate immune processes were detected. Thus, initial innate response to T. cruzi infection may be conditioned by parasite strain diversity, resulting in different profiles of trained immunity modulating subsequent adaptive responses, allowing parasite control or its persistence during the chronic phase. These results call for further characterization of the cross-talk between innate and adaptive immunity according to parasite diversity as well as how altered trained immunity contributes to pathogenesis, as this may lead to better treatments and vaccines.

Authors

Hans Desale, Weihong Tu, Kelly Goff, Preston A. Marx, Claudia Herrera, Eric Dumonteil

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Figure 5

Unsupervised clustering of infected macaques based on PBMC gene signatures.

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Unsupervised clustering of infected macaques based on PBMC gene signatur...
(A) Heatmap represents expression level of differentially expressed genes, color coded as indicated (log2 fold change). Hierarchical clustering of infected macaques resulted in 3 clusters, labeled as A, B, and C, that show some overlap with progressor/controller classification: cluster C comprise only controller macaques, while clusters A and B include progressor macaques and 1 controller macaque that was assigned to cluster B. Bottom panel shows T. cruzi parasite DTU composition among individual macaques from the respective gene expression clusters. (B) Average number of DTUs infecting individual macaques from the respective clusters. Data presented as mean ± SEM. (C) LDA of macaques based on the DTU composition of infecting parasite strains, indicating significant clustering corresponding to that based on PBMC gene signatures (1-way PERMANOVA, P = 0.012), with up to 77% of individual macaques correctly classified to their respective cluster.

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