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Ablating UNG activity in a mouse model inhibits colorectal cancer growth by increasing tumor immunogenicity
Eric S. Christenson, Brandon E. Smith, Thanh J. Nguyen, Alens Valentin, Soren Charmsaz, Nicole E. Gross, Sarah M. Shin, Alexei Hernandez, Won Jin Ho, Srinivasan Yegnasubramanian, James T. Stivers
Eric S. Christenson, Brandon E. Smith, Thanh J. Nguyen, Alens Valentin, Soren Charmsaz, Nicole E. Gross, Sarah M. Shin, Alexei Hernandez, Won Jin Ho, Srinivasan Yegnasubramanian, James T. Stivers
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Research Article Genetics Immunology Oncology

Ablating UNG activity in a mouse model inhibits colorectal cancer growth by increasing tumor immunogenicity

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Abstract

Uracil DNA glycosylase (UNG) excises uracil and 5-fluorouracil bases from DNA and is implicated in fluorodeoxyuridine (FdU) resistance. Here we explore the effects of inhibiting UNG activity, or depleting the UNG protein, in 2 mouse syngeneic models for colorectal cancer. Overexpressing the small UNG inhibitor protein (UGI) in mismatch repair–deficient (MMR-deficient) MC38 cells injected into C57BL/6J mice delayed tumor growth and prolonged survival when combined with FdU. Combining UNG inhibition with FdU numerically increased CD4+ T lymphocytes and B cells compared with FdU or UNG inhibition alone, suggesting an immune component to the effects. In contrast, shRNA depletion of UNG in the absence of FdU treatment resulted in 70% of mice clearing their tumors, and a 3-fold increase in overall survival compared with FdU. Analysis of MC38 tumor–infiltrating immune cells showed UNG depletion increased monocyte and dendritic cell populations, with CD8+ T cells also numerically increased. shRNA depletion of UNG in MMR-proficient CT-26 cells injected into BALB/c mice produced minimal benefit; the addition of anti–PD-1 antibody synergized with UNG depletion to increase survival. Cytotoxic T cell depletion abolished the benefits of UNG depletion in both models. These findings suggest UNG inhibition and/or depletion could enhance antitumor immune responses in humans.

Authors

Eric S. Christenson, Brandon E. Smith, Thanh J. Nguyen, Alens Valentin, Soren Charmsaz, Nicole E. Gross, Sarah M. Shin, Alexei Hernandez, Won Jin Ho, Srinivasan Yegnasubramanian, James T. Stivers

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Figure 6

Determination of the influence of UNG depletion on the MC38 tumor microenvironment using CyTOF and IMC.

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Determination of the influence of UNG depletion on the MC38 tumor microe...
(A) In the CyTOF experiment, 2.5 × 105 MC38 cells expressing shRNAUNG or shRNActrl were injected into the right hind limb of female C57BL/6J mice (20 mice total: 10 mice for each experimental group). On day 7, the mice were sacrificed and the tumors were excised. Tumors were homogenized and stained with a panel of 40 antibodies tagged with heavy metal isotopes for analysis by CyTOF. A Kruskal-Wallis analysis demonstrated statistically significant changes in monocyte, DC, and macrophage subpopulations. Selected cell subtypes are shown in the figure. The entire list and a heatmap plot of the data is provided in Supplemental Figures 7 and 9. Data are shown as box-and-whisker plots, with the mean indicated by a horizontal line, middle quartiles represented by the box bounds, and range denoted by the whiskers. Tc cells, CD8+ T lymphocytes; Th cells, CD4+ T lymphocytes; NK cells, natural kill cells; DC subtype 1, CD11B+IAIE+CD80+CD11C+CD40+; DC subtype 2, CD11B+IAIE+CD80–CD11C+CD40+; Mac_I, CD206–CD11B+IAIE–Ki67–CD40–Ly6C– macrophages; Mac_III, CD206+PD-L1+Ki67–CD40+ macrophages; Mac_IV, CD206+PD-L1+CD40– macrophages; Monocyte_I, Ly6C+PD-L1–IAIE+CD40–Ki67–CD206– monocytes; Monocyte_II, Ly6C+PD-L1+IAIE–CD40–Ki67–CD206– monocytes; Monocyte_III, Ly6C+PD-L1+IAIE+CD40–Ki67–CD206– monocytes. (B) Shows representative images from the IMC experiment demonstrating lower levels of intratumoral Tregs and higher levels of cytotoxic T cells in the UNG-depleted tumors. Scale bar: 100 μm. IMC subpopulation densities are shown in Supplemental Figure 10.

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