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Analysis of CNS autoimmunity in genetically diverse mice reveals unique phenotypes and mechanisms
Emily A. Nelson, Anna L. Tyler, Taylor Lakusta-Wong, Karolyn G. Lahue, Katherine C. Hankes, Cory Teuscher, Rachel M. Lynch, Martin T. Ferris, J. Matthew Mahoney, Dimitry N. Krementsov
Emily A. Nelson, Anna L. Tyler, Taylor Lakusta-Wong, Karolyn G. Lahue, Katherine C. Hankes, Cory Teuscher, Rachel M. Lynch, Martin T. Ferris, J. Matthew Mahoney, Dimitry N. Krementsov
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Research Article Genetics

Analysis of CNS autoimmunity in genetically diverse mice reveals unique phenotypes and mechanisms

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Abstract

Multiple sclerosis (MS) is a complex disease with significant heterogeneity in disease course and progression. Genetic studies have identified numerous loci associated with MS risk, but the genetic basis of disease progression remains elusive. To address this, we leveraged the Collaborative Cross (CC), a genetically diverse mouse strain panel, and experimental autoimmune encephalomyelitis (EAE). The 32 CC strains studied captured a wide spectrum of EAE severity, trajectory, and presentation, including severe-progressive, monophasic, relapsing remitting, and axial rotary–EAE (AR-EAE), accompanied by distinct immunopathology. Sex differences in EAE severity were observed in 6 strains. Quantitative trait locus analysis revealed distinct genetic linkage patterns for different EAE phenotypes, including EAE severity and incidence of AR-EAE. Machine learning–based approaches prioritized candidate genes for loci underlying EAE severity (Abcc4 and Gpc6) and AR-EAE (Yap1 and Dync2h1). This work expands the EAE phenotypic repertoire and identifies potentially novel loci controlling unique EAE phenotypes, supporting the hypothesis that heterogeneity in MS disease course is driven by genetic variation.

Authors

Emily A. Nelson, Anna L. Tyler, Taylor Lakusta-Wong, Karolyn G. Lahue, Katherine C. Hankes, Cory Teuscher, Rachel M. Lynch, Martin T. Ferris, J. Matthew Mahoney, Dimitry N. Krementsov

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Figure 2

EAE in CC strains captures clinically relevant disease courses.

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EAE in CC strains captures clinically relevant disease courses.
EAE was ...
EAE was induced and evaluated in CC and B6 reference control mice as described in Figure 1. (A–E) Daily strain disease course profiles for strains of interest are shown, including severe-progressive EAE in CC028 (5M, 5F) (red) and EAE resistance in CC011 (5M, 5F) (blue), compared with B6 (18M, 18F) reference controls (gray) (sexes pooled) (A); AR-EAE in CC004 (7M, 7F) (orange) (sexes pooled) (B); RR-EAE in CC002 (6M, 5F) (sexes pooled) (C); secondary progressive EAE in CC043 (5M, 5F) (sexes pooled) (D); and monophasic-EAE in CC068 (4M, 5F) (sexes shown separately due to timing of disease onset) (E). All panels show classic-EAE scores, except B, which shows AR-EAE scores, as indicated on the y axes.

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