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BPDCN MYB fusions regulate cell cycle genes, impair differentiation, and induce myeloid–dendritic cell leukemia
Christopher A.G. Booth, Juliette M. Bouyssou, Katsuhiro Togami, Olivier Armand, Hembly G. Rivas, Kezhi Yan, Siobhan Rice, Shuyuan Cheng, Emily M. Lachtara, Jean-Pierre Bourquin, Alex Kentsis, Esther Rheinbay, James A. DeCaprio, Andrew A. Lane
Christopher A.G. Booth, Juliette M. Bouyssou, Katsuhiro Togami, Olivier Armand, Hembly G. Rivas, Kezhi Yan, Siobhan Rice, Shuyuan Cheng, Emily M. Lachtara, Jean-Pierre Bourquin, Alex Kentsis, Esther Rheinbay, James A. DeCaprio, Andrew A. Lane
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Research Article Hematology

BPDCN MYB fusions regulate cell cycle genes, impair differentiation, and induce myeloid–dendritic cell leukemia

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Abstract

MYB fusions are recurrently found in select cancers, including blastic plasmacytoid DC neoplasm (BPDCN), an acute leukemia with poor prognosis. They are markedly enriched in BPDCN compared with other blood cancers and, in some patients, are the only obvious somatic mutation detected. This suggests that they may alone be sufficient to drive DC transformation. MYB fusions are hypothesized to alter the normal transcription factor activity of MYB, but, mechanistically, how they promote leukemogenesis is poorly understood. Using CUT&RUN chromatin profiling, we found that, in BPDCN leukemogenesis, MYB switches from being a regulator of DC lineage genes to aberrantly regulating G2/M cell cycle control genes. MYB fusions found in patients with BPDCN increased the magnitude of DNA binding at these locations, and this was linked to BPDCN-associated gene expression changes. Furthermore, expression of MYB fusions in vivo impaired DC differentiation and induced transformation to generate a mouse model of myeloid-dendritic acute leukemia. Therapeutically, we present evidence that all-trans retinoic acid (ATRA) may cause loss of MYB protein and cell death in BPDCN.

Authors

Christopher A.G. Booth, Juliette M. Bouyssou, Katsuhiro Togami, Olivier Armand, Hembly G. Rivas, Kezhi Yan, Siobhan Rice, Shuyuan Cheng, Emily M. Lachtara, Jean-Pierre Bourquin, Alex Kentsis, Esther Rheinbay, James A. DeCaprio, Andrew A. Lane

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Figure 2

BPDCN MYB fusions cause increased binding to G2/M cell cycle genes.

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BPDCN MYB fusions cause increased binding to G2/M cell cycle genes.
(A) ...
(A) Schematic showing expression of MYB-V5–knock-in constructs from the endogenous MYB locus in K562 cells. (B) Western blots showing expression of MYB-V5–knock-in constructs in K562 cells. (C) V5 and IgG CUT&RUN tracks at the CDC20 locus in MYB-V5–knock-in K562 cells of the indicated genotypes, for 2 different V5 antibodies. (D) Top 3 ranked motifs enriched in MYB CUT&RUN peaks in K562 nontransfected control (NTC) cells, and percent of peaks containing each motif. (E) Top 10 ranked Reactome gene sets overlapping with genes showing differentially increased MYB CUT&RUN binding in MYB-TR and MYB::PLEKHO1 relative to NTC and MYB-WT K562 cells at promoter regions. (F) Top 3 motifs enriched in MYB CUT&RUN peaks showing differentially increased binding in MYB-TR and MYB::PLEKHO1 relative to NTC and MYB-WT K562 cells, and percent of peaks containing each motif. (G) GSEA comparing (left) normal pDCs and primary BPDCN cells or (right) normal pDCs and BPDCN PDX cells for genes showing differentially increased MYB CUT&RUN binding at promoter regions in MYB-TR and MYB::PLEKHO1 relative to NTC and MYB-WT K562 cells (n = 180 genes).

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