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Characterization of SMA type II skeletal muscle from treated patients shows OXPHOS deficiency and denervation
Fiorella Carla Grandi, Stéphanie Astord, Sonia Pezet, Elèna Gidaja, Sabrina Mazzucchi, Maud Chapart, Stéphane Vasseur, Kamel Mamchaoui, Piera Smeriglio
Fiorella Carla Grandi, Stéphanie Astord, Sonia Pezet, Elèna Gidaja, Sabrina Mazzucchi, Maud Chapart, Stéphane Vasseur, Kamel Mamchaoui, Piera Smeriglio
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Research Article Genetics Muscle biology

Characterization of SMA type II skeletal muscle from treated patients shows OXPHOS deficiency and denervation

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Abstract

Spinal muscular atrophy (SMA) is a recessive developmental disorder caused by the genetic loss or mutation of the gene SMN1 (survival of motor neuron 1). SMA is characterized by neuromuscular symptoms and muscle weakness. Several years ago, SMA treatment underwent a radical transformation, with the approval of 3 different SMN-dependent disease-modifying therapies. This includes 2 SMN2 splicing therapies — risdiplam and nusinersen. One main challenge for type II SMA patients treated with these drugs is ongoing muscle fatigue, limited mobility, and other skeletal problems. To date, few molecular studies have been conducted on SMA patient–derived tissues after treatment, limiting our understanding of what targets remain unchanged after the spinal cord–targeted therapies are applied. Therefore, we collected paravertebral muscle from 8 type II patients undergoing spinal surgery for scoliosis and 7 controls. We used RNA-seq to characterize their transcriptional profiles and correlate these molecular changes with muscle histology. Despite the limited cohort size and heterogeneity, we observed a consistent loss of oxidative phosphorylation (OXPHOS) machinery of the mitochondria, a decrease in mitochondrial DNA copy number, and a correlation between signals of cellular stress, denervation, and increased fibrosis. This work provides new putative targets for combination therapies for type II SMA.

Authors

Fiorella Carla Grandi, Stéphanie Astord, Sonia Pezet, Elèna Gidaja, Sabrina Mazzucchi, Maud Chapart, Stéphane Vasseur, Kamel Mamchaoui, Piera Smeriglio

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Figure 3

Transcriptional characterization of treated SMA and control muscle samples.

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Transcriptional characterization of treated SMA and control muscle sampl...
(A) Diagram of the RNA-seq library generation process used for the samples. (B) Principal component analysis (PCA) plot obtained using the top 2,000 variably expressed genes in each muscle RNA-seq library. Each data point represents the cDNA library of a single sample. The variance explained for each principal component (PC) is plotted on the axes. (C) Heatmap of the genes that are differentially expressed (DEGs) between SMA and control samples. Each column represents the DEGs from 1 sample, which have been hierarchically clustered. Diagnosis and sex are designated by the colored bars on the top. Transcripts on the heatmap are presented as z-scored transcripts per million (TPM) counts. DEGs include 166 downregulated and 396 upregulated genes comparing SMA- versus control-derived samples using DESeq2 using the parameters log2(fold change) > 0.5, Padj < 0.05, and standard error estimate for the log(fold change) standard error (lfcSE) of 1. Genes, fold change, and the Padj values for all DEGs can be found in Supplemental Table 1. (D) GO terms associated with the upregulated and downregulated genes. The terms are plotted according to their Padj value of enrichment. (E) TPM of 3 well-known SMA modifier genes, NCALD, NAIP, and PLS3. Each data point represents a single patient. The means of each group were compared with a 2-sided Student’s t test. *P < 0.05. NS, not significant (P > 0.05).

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ISSN 2379-3708

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