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A dual-acting DNASE1/DNASE1L3 biologic prevents autoimmunity and death in genetic and induced lupus models
Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock
Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock
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Research Article Therapeutics

A dual-acting DNASE1/DNASE1L3 biologic prevents autoimmunity and death in genetic and induced lupus models

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Abstract

A defining feature of systemic lupus erythematosus (SLE) is loss of tolerance to self-DNA, and deficiency of DNASE1L3, the main enzyme responsible for chromatin degradation in blood, is also associated with SLE. This association can be found in an ultrarare population of pediatric patients with DNASE1L3 deficiency who develop SLE, adult patients with loss-of-function variants of DNASE1L3 who are at a higher risk for SLE, and patients with sporadic SLE who have neutralizing autoantibodies against DNASE1L3. To mitigate the pathogenic effects of inherited and acquired DNASE1L3 deficiencies, we engineered a long-acting enzyme biologic with dual DNASE1/DNASE1L3 activity that is resistant to DNASE1 and DNASE1L3 inhibitors. Notably, we found that the biologic prevented the development of lupus in Dnase1–/–Dnase1L3–/– double-knockout mice and rescued animals from death in pristane-induced lupus. Finally, we confirmed that the human isoform of the enzyme biologic was not recognized by autoantibodies in SLE and efficiently degraded genomic and mitochondrial cell–free DNA, as well as microparticle DNA, in SLE plasma. Our findings suggest that autoimmune diseases characterized by aberrant DNA accumulation, such as SLE, can be effectively treated with a replacement DNASE tailored to bypass pathogenic mechanisms, both genetic and acquired, that restrict DNASE1L3 activity.

Authors

Paul R. Stabach, Dominique Sims, Eduardo Gomez-Bañuelos, Sandra Zehentmeier, Kris Dammen-Brower, Andrew Bernhisel, Sophia Kujawski, Sam G. Lopez, Michelle Petri, Daniel W. Goldman, Ethan R. Lester, Quan Le, Tayyaba Ishaq, Hana Kim, Shivani Srivastava, Deepika Kumar, Joao P. Pereira, Kevin J. Yarema, Fotios Koumpouras, Felipe Andrade, Demetrios T. Braddock

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Figure 2

Overview of the design, production, purification, and pharmacodynamics of optimized biologics.

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Overview of the design, production, purification, and pharmacodynamics o...
(A) Isoforms of DNASE1 and DNASE1L3 enzymes (green) with various point mutations (red) chosen to confer dual activity and actin resistance were fused to IgG1 Fc domains, which were further optimized to enhance bioavailability via enhanced FcRn recycling using point mutations (cyan). (B) Fluorescent staining of CHO cells stably transfected with human ST6GAL1 to enhance sialylation of the biologic. Red fluorescence highlights ST6GAL1 in a peri-Golgi distribution, and cyan fluorescence highlights nuclei. Original magnification, ×100. The biologics were produced in these CHO cells, and sialic acid precursors were added to the growth media to glycopolish the enzymes. (C) SDS-PAGE of enzyme biologics during purification. Lane 1 shows concentrated extracellular CHO cell–conditioned media before affinity chromatography; lane 2 shows purified DNASE1-Fc parent construct 1587 with a predicted MW of 58 kDa; lane 3 shows construct 1671; lanes 4 and 5 represent two different preparations of LBme; and lane 6 shows construct 1689. Newly formed N-glycans in the parent sequence exhibit an increased mobility shift. (D) Pharmacodynamic studies were conducted in vivo in DKO mice to establish bioavailability, dose range, and dose frequency. DKO mice were injected with a single s.c. dose of biologic, their serum was sampled at various time points and incubated with free DNA and chromatin for 5 minutes at 37°C, and the digestion of plasma was imaged on an agarose gel. The example provided was taken from serum of a DKO mouse before (lane 1) and 6 days after (lane 2) a single s.c. dose of 1 mg/kg LBme. All dosed mice were confirmed to have similar biologic activity.

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