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Liver sinusoidal endothelial cells contribute to portal hypertension through collagen type IV–driven sinusoidal remodeling
Can Gan, Usman Yaqoob, Jianwen Lu, Man Xie, Abid Anwar, Nidhi Jalan-Sakrikar, Sofia Jerez, Tejasav S. Sehrawat, Amaia Navarro-Corcuera, Enis Kostallari, Nawras W. Habash, Sheng Cao, Vijay H. Shah
Can Gan, Usman Yaqoob, Jianwen Lu, Man Xie, Abid Anwar, Nidhi Jalan-Sakrikar, Sofia Jerez, Tejasav S. Sehrawat, Amaia Navarro-Corcuera, Enis Kostallari, Nawras W. Habash, Sheng Cao, Vijay H. Shah
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Research Article Cell biology Hepatology

Liver sinusoidal endothelial cells contribute to portal hypertension through collagen type IV–driven sinusoidal remodeling

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Abstract

Portal hypertension (PHTN) is a severe complication of liver cirrhosis and is associated with intrahepatic sinusoidal remodeling induced by sinusoidal resistance and angiogenesis. Collagen type IV (COL4), a major component of basement membrane, forms in liver sinusoids upon chronic liver injury. However, the role, cellular source, and expression regulation of COL4 in liver diseases are unknown. Here, we examined how COL4 is produced and how it regulates sinusoidal remodeling in fibrosis and PHTN. Human cirrhotic liver sample RNA sequencing showed increased COL4 expression, which was further verified via immunofluorescence staining. Single-cell RNA sequencing identified liver sinusoidal endothelial cells (LSECs) as the predominant source of COL4 upregulation in mouse fibrotic liver. In addition, COL4 was upregulated in a TNF-α/NF-κB–dependent manner through an epigenetic mechanism in LSECs in vitro. Indeed, by utilizing a CRISPRi-dCas9-KRAB epigenome-editing approach, epigenetic repression of the enhancer-promoter interaction showed silencing of COL4 gene expression. LSEC-specific COL4 gene mutation or repression in vivo abrogated sinusoidal resistance and angiogenesis, which thereby alleviated sinusoidal remodeling and PHTN. Our findings reveal that LSECs promote sinusoidal remodeling and PHTN during liver fibrosis through COL4 deposition.

Authors

Can Gan, Usman Yaqoob, Jianwen Lu, Man Xie, Abid Anwar, Nidhi Jalan-Sakrikar, Sofia Jerez, Tejasav S. Sehrawat, Amaia Navarro-Corcuera, Enis Kostallari, Nawras W. Habash, Sheng Cao, Vijay H. Shah

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Figure 4

Epigenetic repression of the enhancer-promoter interaction silences Col4a1 and Col4a2 gene expression in response to TNF-α stimulation.

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Epigenetic repression of the enhancer-promoter interaction silences Col4...
Isolated LSECs from dCas9-KRAB Cdh5CreERT2 mice after in vivo tamoxifen injection were transfected with single-guide RNAs (sgRNAs), which target the bidirectional promoter region or putative enhancer regions of the COL4 genes. Nontargeting sgRNA was used as a negative control. (A) Among sgRNAs targeting the bidirectional promoter region, sgRNAs 4 (sg4) and 5 (sg5) most strongly repressed the expression of Col4a1 and Col4a2 (red boxes) compared with nontargeting sgRNA via qPCR assay (n = 3, biologically independent samples). (B) Among sgRNAs targeting the putative enhancer regions, sgER1-1 (red boxes) most strongly repressed the expression of Col4a1 and Col4a2 compared with nontargeting sgRNA via qPCR (n = 4, biologically independent samples). (C) ChIP-qPCR assay revealed decreased H3K4me3 enrichment at the promoter region, as well as decreased H3K27ac enrichment at the putative enhancer region, after sg4 and sg5 transfection into isolated mouse LSECs expressing dCas9-KRAB (n = 3, biologically independent samples). (D) ChIP-qPCR showed decreased H3K27ac enrichment at the putative enhancer region, as well as decreased H3K4me3 enrichment at the promoter region, after sgER1-1 was transfected into isolated mouse LSECs expressing dCas9-KRAB (n = 3, biologically independent samples). (E) ChIP-qPCR showed increased H3K9me3 enrichment at the corresponding region when sgRNAs targeted the promoter or putative enhancer regions (n = 3, biologically independent samples). Graphs represent mean ± SEM. *P < 0.05, **P < 0.01, ***P < 0.001, 1-way ANOVA followed by Bonferroni’s posttest.

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