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TNF drives aberrant BMP signaling to induce endothelial and mesenchymal dysregulation in pulmonary hypertension
Maria de la Luz Garcia-Hernandez, Javier Rangel-Moreno, Qingfu Xu, YeJin Jeong, Soumyaroop Bhattacharya, Ravi Misra, Stacey Duemmel, Ke Yuan, Benjamin D. Korman
Maria de la Luz Garcia-Hernandez, Javier Rangel-Moreno, Qingfu Xu, YeJin Jeong, Soumyaroop Bhattacharya, Ravi Misra, Stacey Duemmel, Ke Yuan, Benjamin D. Korman
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Research Article Inflammation Pulmonology Vascular biology

TNF drives aberrant BMP signaling to induce endothelial and mesenchymal dysregulation in pulmonary hypertension

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Abstract

The pathobiology of pulmonary hypertension (PH) is complex and multiple cell types contribute to disease pathogenesis. We sought to characterize the molecular crosstalk between endothelial and mesenchymal cells that promote PH in the tumor necrosis factor α–transgenic (TNF-Tg) model of PH. Pulmonary endothelial and mesenchymal cells were isolated from WT and TNF-Tg mice and underwent single-cell RNA sequencing. Data were analyzed using clustering, differential gene expression and pathway analysis, ligand-receptor interaction, transcription factor binding, and RNA velocity assessments. Significantly altered ligand-receptor interactions were confirmed with immunofluorescent staining. TNF-Tg mice had increases in smooth muscle cells and Col14+ fibroblasts, and reductions in general capillary (gCAP) endothelial cells, Col13+ fibroblasts, pericytes, and myofibroblasts. Pathway analysis demonstrated NF-κB–, JAK/STAT-, and interferon-mediated inflammation, endothelial apoptosis, loss of vasodilatory pathways, increased TGF-β signaling, and smooth muscle cell proliferation. Ligand-receptor analysis demonstrated a loss of BMPR2 signaling in TNF-Tg lungs and establishment of a maladaptive BMP signaling cascade, which functional studies revealed stemmed from endothelial NF-κB activation and subsequent endothelial SMAD2/3 signaling. This system highlights a complex set of changes in cellular composition, cell communication, and cell fate driven by TNF signaling that lead to aberrant BMP signaling that is critical for development of PH.

Authors

Maria de la Luz Garcia-Hernandez, Javier Rangel-Moreno, Qingfu Xu, YeJin Jeong, Soumyaroop Bhattacharya, Ravi Misra, Stacey Duemmel, Ke Yuan, Benjamin D. Korman

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Figure 3

Velocity analysis demonstrates gCAP to aCAP transition in TNF-Tg mice.

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Velocity analysis demonstrates gCAP to aCAP transition in TNF-Tg mice.
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(A) RNA velocity pseudotime is shown across WT (left) and TNF-Tg (right) conditions overlaying prior UMAP plots. Purple indicates lower pseudotime and yellow indicates higher pseudotime. (B) Velocity length (left) and confidence (right) indicate the likelihood of cellular transition in WT (left) and TNF-Tg (right) lungs. (C) Velocity embeddings show vectors indicating cellular transition at 8, 14, and 20 weeks in WT (left) and TNF-Tg (right) conditions. Note prominent gCAP to aCAP transition at 14 and 20 weeks in TNF-Tg conditions. (D) Directed PAGA plots created with CellRank identify likelihood of given cellular fate decisions. Nodes correspond to cell type clusters and edge thickness denotes transcriptomic similarity. Directed edges reflect local velocity flow and velocity pseudotemporal ordering to ascertain initial/terminal cell states and pie charts within each node show the probability of each cell type transitioning to known terminal states. Colors indicate annotated cell populations.

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