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Lentivirus-mediated gene therapy corrects ribosomal biogenesis and shows promise for Diamond Blackfan anemia
Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro
Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro
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Research Article Hematology Therapeutics

Lentivirus-mediated gene therapy corrects ribosomal biogenesis and shows promise for Diamond Blackfan anemia

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Abstract

This study lays the groundwork for future lentivirus-mediated gene therapy in patients with Diamond Blackfan anemia (DBA) caused by mutations in ribosomal protein S19 (RPS19), showing evidence of a new safe and effective therapy. The data show that, unlike patients with Fanconi anemia (FA), the hematopoietic stem cell (HSC) reservoir of patients with DBA was not significantly reduced, suggesting that collection of these cells should not constitute a remarkable restriction for DBA gene therapy. Subsequently, 2 clinically applicable lentiviral vectors were developed. In the former lentiviral vector, PGK.CoRPS19 LV, a codon-optimized version of RPS19 was driven by the phosphoglycerate kinase promoter (PGK) already used in different gene therapy trials, including FA gene therapy. In the latter one, EF1α.CoRPS19 LV, RPS19 expression was driven by the elongation factor alpha short promoter, EF1α(s). Preclinical experiments showed that transduction of DBA patient CD34+ cells with the PGK.CoRPS19 LV restored erythroid differentiation, and demonstrated the long-term repopulating properties of corrected DBA CD34+ cells, providing evidence of improved erythroid maturation. Concomitantly, long-term restoration of ribosomal biogenesis was verified using a potentially novel method applicable to patients’ blood cells, based on ribosomal RNA methylation analyses. Finally, in vivo safety studies and proviral insertion site analyses showed that lentivirus-mediated gene therapy was nontoxic.

Authors

Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro

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Figure 4

Improved erythroid differentiation mediated by transduction of BM CD34+ cells from DBA patients with PGK.CoRPS19 LV or EF1α(s).CoRPS19 LV.

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Improved erythroid differentiation mediated by transduction of BM CD34+ ...
(A) Protocol used to obtain a model of in vivo erythropoiesis in immunodeficient NSG mice. (B) Flow cytometry strategy used. (C) Bar plot showing the percentage of CD71–/CD235a+ cells resulting from BM hCD45+ DBA cells transduced with PGK.CoRPS19 LV. (D) Primer extension analysis of precursor rRNA dimethylation levels. The experiment was performed on human CD45+ hematopoietic cells purified at 90 days posttransplantation from NSG mice that had been transplanted with DBA patient CD34+ cells previously transduced with the therapeutic vector PGK.CoRPS19 LV. Arrows indicate the position of the dimethylation. Dimethylation levels were quantitated (signal normalized to the band denoted with a double star). (E) Expression of CoRPS19 in RPS19-deficient CD34+ cells corrected with PGK.CoRPS19 LV, after 14 days of expansion in erythroid differentiation medium. The graph shows the mean and the standard deviation (n = 4). (F) Erythroid progenitor expansion in erythroid differentiation medium after transduction of thawed CD34+ cells from 4 DBA patients with PGK.CoRPS19 LV, as compared with the corresponding nontransduced RPS19-deficient cells (MOCK). (G) Total yield of CD71–/CD235a+ mature erythroid progenitors after transfection of thawed CD34+ cells with PGK.CoRPS19 LV, as compared with nontransduced RPS19-deficient cells (mock). The graph shows the mean and the standard deviation. (H) Left: Engraftment level (percentage of hCD45+ cells) measured 30, 45, and 60 days after transplantation of 3 × 10–5 BM CD34+ cells from 4 DBA patients (DBA-47, DBA-48, DBA-49, DBA-50) in NBSGW mouse strain. Right: multilineage potential of DBA patient cells transduced with the therapeutic vector PGK.CoRPS19 LV or untransduced: myeloid cells (CD33+), lymphoid cells (CD19+), and HSCs (CD34+). Each symbol represents 1 specific patient. (I) Engrafted erythroid cell populations (expressed as percentages) observed at 45 days posttransplantation in NBSGW recipients.

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