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Lentivirus-mediated gene therapy corrects ribosomal biogenesis and shows promise for Diamond Blackfan anemia
Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro
Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro
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Research Article Hematology Therapeutics

Lentivirus-mediated gene therapy corrects ribosomal biogenesis and shows promise for Diamond Blackfan anemia

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Abstract

This study lays the groundwork for future lentivirus-mediated gene therapy in patients with Diamond Blackfan anemia (DBA) caused by mutations in ribosomal protein S19 (RPS19), showing evidence of a new safe and effective therapy. The data show that, unlike patients with Fanconi anemia (FA), the hematopoietic stem cell (HSC) reservoir of patients with DBA was not significantly reduced, suggesting that collection of these cells should not constitute a remarkable restriction for DBA gene therapy. Subsequently, 2 clinically applicable lentiviral vectors were developed. In the former lentiviral vector, PGK.CoRPS19 LV, a codon-optimized version of RPS19 was driven by the phosphoglycerate kinase promoter (PGK) already used in different gene therapy trials, including FA gene therapy. In the latter one, EF1α.CoRPS19 LV, RPS19 expression was driven by the elongation factor alpha short promoter, EF1α(s). Preclinical experiments showed that transduction of DBA patient CD34+ cells with the PGK.CoRPS19 LV restored erythroid differentiation, and demonstrated the long-term repopulating properties of corrected DBA CD34+ cells, providing evidence of improved erythroid maturation. Concomitantly, long-term restoration of ribosomal biogenesis was verified using a potentially novel method applicable to patients’ blood cells, based on ribosomal RNA methylation analyses. Finally, in vivo safety studies and proviral insertion site analyses showed that lentivirus-mediated gene therapy was nontoxic.

Authors

Yari Giménez, Manuel Palacios, Rebeca Sánchez-Domínguez, Christiane Zorbas, Jorge Peral, Alexander Puzik, Laura Ugalde, Omaira Alberquilla, Mariela Villanueva, Paula Río, Eva Gálvez, Lydie Da Costa, Marion Strullu, Albert Catala, Anna Ruiz-Llobet, Jose Carlos Segovia, Julián Sevilla, Brigitte Strahm, Charlotte M. Niemeyer, Cristina Beléndez, Thierry Leblanc, Denis L.J. Lafontaine, Juan Bueren, Susana Navarro

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Figure 2

Phenotypic correction of DBA cell models using PGK.CoRPS19 LV and EF1α.CoRPS19 LV therapeutic LVs.

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Phenotypic correction of DBA cell models using PGK.CoRPS19 LV and EF1α.C...
(A) Northern blot analysis of precursor rRNA levels. Left, upper part: pre-rRNA precursors from K562 cells transduced with the interference vector THM-shRPS19 LV, with or without a therapeutic vector (PGK.CoRPS19 or EF1α.CoRPS19 LVs), probed with a radioactively labeled oligonucleotide (LD2122). Left, lower part: mature 18S and 28S rRNAs on an ethidium bromide–stained gel. Right, phosphorimager quantification of the combined amounts of 21S and 21C pre-rRNAs, mean value and standard deviation of 3 experiments. The degree of significance was determined with the 1-way ANOVA test (P value; ** ≤ 0.01; *** ≤ 0.001; **** ≤ 0.0001). (B) Northern blot analysis of precursor rRNA levels. Left, total RNA extracted from K562 cells transduced with interference vector MISSION-shRPS19 LV, with or without the therapeutic PGK.CoRPS19 or EF1α.CoRPS19 LVs. Right, phosphorimager quantification of the combined amounts of 21S and 21C pre-rRNAs, mean value and standard deviation of 3 experiments. The degree of significance was determined with the 1-way ANOVA test (P value; **** ≤ 0.0001). Both blots shown are representative of triplicate blots (Supplemental Figure 3). (C) Primer extension analysis of precursor rRNA dimethylation levels in K562 cells transduced with the interference vector THM.shRPS19 LV, with or without a therapeutic vector (PGK.CoRPS19 LV or EF1α.CoRPS19 LV). A radioactively labeled oligonucleotide, LD2122, specific to the internal transcribed spacer 1 (ITS1) sequence located 3′ to the dimethylation mark, was extended with reverse transcriptase (see D). The position of the dimethylation is indicated. Dimethylation levels were quantitated with a phosphorimager (signal normalized to the band denoted with a star) as described (31). (D) Schematics representing the oligonucleotides used in Northern blotting (LD2122) and primer extension (LD2141, see C) and the major pre-rRNA precursors detected.

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