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Preclinical spheroid models identify BMX as a therapeutic target for metastatic MYCN nonamplified neuroblastoma
Santhoshkumar Sundaramoorthy, Daniele Filippo Colombo, Rajendran Sanalkumar, Liliane Broye, Katia Balmas Bourloud, Gaylor Boulay, Luisa Cironi, Ivan Stamenkovic, Raffaele Renella, Fabien Kuttler, Gerardo Turcatti, Miguel N. Rivera, Annick Mühlethaler-Mottet, Anaïs Flore Bardet, Nicolò Riggi
Santhoshkumar Sundaramoorthy, Daniele Filippo Colombo, Rajendran Sanalkumar, Liliane Broye, Katia Balmas Bourloud, Gaylor Boulay, Luisa Cironi, Ivan Stamenkovic, Raffaele Renella, Fabien Kuttler, Gerardo Turcatti, Miguel N. Rivera, Annick Mühlethaler-Mottet, Anaïs Flore Bardet, Nicolò Riggi
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Research Article Therapeutics

Preclinical spheroid models identify BMX as a therapeutic target for metastatic MYCN nonamplified neuroblastoma

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Abstract

The development of targeted therapies offers new hope for patients affected by incurable cancer. However, multiple challenges persist, notably in controlling tumor cell plasticity in patients with refractory and metastatic illness. Neuroblastoma (NB) is an aggressive pediatric malignancy originating from defective differentiation of neural crest–derived progenitors with oncogenic activity due to genetic and epigenetic alterations and remains a clinical challenge for high-risk patients. To identify critical genes driving NB aggressiveness, we performed combined chromatin and transcriptome analyses on matched patient-derived xenografts (PDXs), spheroids, and differentiated adherent cultures derived from metastatic MYCN nonamplified tumors. Bone marrow kinase on chromosome X (BMX) was identified among the most differentially regulated genes in PDXs and spheroids versus adherent models. BMX expression correlated with high tumor stage and poor patient survival and was crucial to the maintenance of the self-renewal and tumorigenic potential of NB spheroids. Moreover, BMX expression positively correlated with the mesenchymal NB cell phenotype, previously associated with increased chemoresistance. Finally, BMX inhibitors readily reversed this cellular state, increased the sensitivity of NB spheroids toward chemotherapy, and partially reduced tumor growth in a preclinical NB model. Altogether, our study identifies BMX as a promising innovative therapeutic target for patients with high-risk MYCN nonamplified NB.

Authors

Santhoshkumar Sundaramoorthy, Daniele Filippo Colombo, Rajendran Sanalkumar, Liliane Broye, Katia Balmas Bourloud, Gaylor Boulay, Luisa Cironi, Ivan Stamenkovic, Raffaele Renella, Fabien Kuttler, Gerardo Turcatti, Miguel N. Rivera, Annick Mühlethaler-Mottet, Anaïs Flore Bardet, Nicolò Riggi

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Figure 3

High BMX expression levels correlate with advanced stage and poor prognosis in nMNA neuroblastoma patients.

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High BMX expression levels correlate with advanced stage and poor progno...
(A) Box plot showing BMX expression from the RNA-Seq data in NB adherent cells, spheroids, and tumors. Adjusted P values from the DEseq2 analysis. (B) Genome browser tracks of RNA-Seq and H3K4me3 ChIP-Seq signals for NB1-M11 and NB4-M7 models at the BMX genomic locus. Blue zones mark the TSS (left) and exons (right) of the BMX gene. (C) qPCR assessment of BMX transcripts after differentiation of NB1 (left) and NB4 (right) spheroids by serum (10% FBS) at indicated times. Relative expression as mean ± SEM values of 3 technical replicates are shown. Statistical analysis was done by unpaired t test. (D) BMX mRNA expression levels across 31 tumor types obtained from the R2 genomics platform. (E) BMX mRNA expression levels in primary NB samples included in the Kocak and Fischer NB cohorts from the R2 genomics platform. Patient samples were grouped based on International Neuroblastoma Staging System (INSS) stages 1 to 4s, and Welch P value is shown. (F) Kaplan-Meier survival curves of patients with NB included in the Kocak and Cangelosi data sets from the R2 genomics platform stratified by BMX expression levels. Statistical analyses were performed using the log-rank test. Data shown in D–F are from publicly available patient cohorts (R2: visualization platform). *P < 0.05, **P < 0.01, ***P < 0.001.

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ISSN 2379-3708

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