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Loss-of-function variant in SPIN4 causes an X-linked overgrowth syndrome
Julian C. Lui, Jacob Wagner, Elaine Zhou, Lijin Dong, Kevin M. Barnes, Youn Hee Jee, Jeffrey Baron
Julian C. Lui, Jacob Wagner, Elaine Zhou, Lijin Dong, Kevin M. Barnes, Youn Hee Jee, Jeffrey Baron
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Research Article Development Genetics

Loss-of-function variant in SPIN4 causes an X-linked overgrowth syndrome

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Abstract

Overgrowth syndromes can be caused by pathogenic genetic variants in epigenetic writers, such as DNA and histone methyltransferases. However, no overgrowth disorder has previously been ascribed to variants in a gene that acts primarily as an epigenetic reader. Here, we studied a male individual with generalized overgrowth of prenatal onset. Exome sequencing identified a hemizygous frameshift variant in Spindlin 4 (SPIN4), with X-linked inheritance. We found evidence that SPIN4 binds specific histone modifications, promotes canonical WNT signaling, and inhibits cell proliferation in vitro and that the identified frameshift variant had lost all of these functions. Ablation of Spin4 in mice recapitulated the human phenotype with generalized overgrowth, including increased longitudinal bone growth. Growth plate analysis revealed increased cell proliferation in the proliferative zone and an increased number of progenitor chondrocytes in the resting zone. We also found evidence of decreased canonical Wnt signaling in growth plate chondrocytes, providing a potential explanation for the increased number of resting zone chondrocytes. Taken together, our findings provide strong evidence that SPIN4 is an epigenetic reader that negatively regulates mammalian body growth and that loss of SPIN4 causes an overgrowth syndrome in humans, expanding our knowledge of the epigenetic regulation of human growth.

Authors

Julian C. Lui, Jacob Wagner, Elaine Zhou, Lijin Dong, Kevin M. Barnes, Youn Hee Jee, Jeffrey Baron

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Figure 5

Resting zone is expanded in male mice with Spin4 deletion.

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Resting zone is expanded in male mice with Spin4 deletion.
(A) Top panel...
(A) Top panel: Masson trichrome–stained proximal tibia growth plate at 2 weeks old, highlighting the difference in resting zone. Scale bar: 200 μm. Bottom panel: high-magnification image of the inset from the top panel. Scale bar: 50 μm. (B) Number of resting zone chondrocytes was counted per 500 μm growth plate width (left) and normalized to the total area of resting zone measured (right). n = 8 (C–F) Immunofluorescence was used to compare the expression of progenitor cell markers Sfrp5 (n = 7) and CD73 (n = 5) in resting zone. (G) To study change in cell proliferation in the resting zone, we injected EdU at 8, 10, and 12 days of age, and growth plates were dissected at 14 days of age. Scale bar: 100 μm. (H) Overall EdU-labeled resting chondrocyte number was increased, but resting zone proliferative index (EdU count normalized to total cell number) was not statistically different between Spin4 KO and WT (n = 6-8). P value represents Student’s t test.

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