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Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury
Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang
Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang
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Research Article Gastroenterology

Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury

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Abstract

Intestinal epithelial integrity is commonly disrupted in patients with critical disorders, but the exact underlying mechanisms are unclear. Long noncoding RNAs transcribed from ultraconserved regions (T-UCRs) control different cell functions and are involved in pathologies. Here, we investigated the role of T-UCRs in intestinal epithelial homeostasis and identified T-UCR uc.230 as a major regulator of epithelial renewal, apoptosis, and barrier function. Compared with controls, intestinal mucosal tissues from patients with ulcerative colitis and from mice with colitis or fasted for 48 hours had increased levels of uc.230. Silencing uc.230 inhibited the growth of intestinal epithelial cells (IECs) and organoids and caused epithelial barrier dysfunction. Silencing uc.230 also increased IEC vulnerability to apoptosis, whereas increasing uc.230 levels protected IECs against cell death. In mice with colitis, reduced uc.230 levels enhanced mucosal inflammatory injury and delayed recovery. Mechanistic studies revealed that uc.230 increased CUG-binding protein 1 (CUGBP1) by acting as a natural decoy RNA for miR-503, which interacts with Cugbp1 mRNA and represses its translation. These findings indicate that uc.230 sustains intestinal mucosal homeostasis by promoting epithelial renewal and barrier function and that it protects IECs against apoptosis by serving as a natural sponge for miR-503, thereby preserving CUGBP1 expression.

Authors

Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang

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Figure 6

uc.230 is essential for intestinal epithelial barrier function in vitro.

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uc.230 is essential for intestinal epithelial barrier function in vitro...
(A) Representative immunoblots of tight and AJ proteins after uc.230 silencing as examined by Western blotting. Caco-2 cells were transfected with anti-uc.230 or control oligo (control), and whole cell lysates were harvested 48 hours thereafter. Equal loading was monitored by assessing GAPDH levels. Experiments were performed 3 separate times and showed similar results. (B) Changes in epithelial barrier function as indicated by changes in TEER (top) and FITC-dextran paracellular permeability (bottom) in cells described in A. TEER assays were performed using 12 mm Transwell filters; and paracellular permeability was assayed by adding the membrane-impermeable trace molecule FITC-dextran to the insert medium. Values are the means ± SEM (n = 5). *P < 0.05 compared with control. (C and D) Effect of ectopically overexpressed (O/E) uc.230 on epithelial barrier function. The levels of various junctional proteins in C and epithelial barrier function in D were examined (n = 5) 48 hours after transfection with uc.230 expression vector or control vector. In B and D, statistical significance was analyzed using unpaired, 2-tailed Student’s t tests.

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