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Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury
Ting-Xi Yu, … , Jean-Pierre Raufman, Jian-Ying Wang
Ting-Xi Yu, … , Jean-Pierre Raufman, Jian-Ying Wang
Published October 10, 2022
Citation Information: JCI Insight. 2022;7(19):e156612. https://doi.org/10.1172/jci.insight.156612.
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Research Article Gastroenterology

Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury

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Abstract

Intestinal epithelial integrity is commonly disrupted in patients with critical disorders, but the exact underlying mechanisms are unclear. Long noncoding RNAs transcribed from ultraconserved regions (T-UCRs) control different cell functions and are involved in pathologies. Here, we investigated the role of T-UCRs in intestinal epithelial homeostasis and identified T-UCR uc.230 as a major regulator of epithelial renewal, apoptosis, and barrier function. Compared with controls, intestinal mucosal tissues from patients with ulcerative colitis and from mice with colitis or fasted for 48 hours had increased levels of uc.230. Silencing uc.230 inhibited the growth of intestinal epithelial cells (IECs) and organoids and caused epithelial barrier dysfunction. Silencing uc.230 also increased IEC vulnerability to apoptosis, whereas increasing uc.230 levels protected IECs against cell death. In mice with colitis, reduced uc.230 levels enhanced mucosal inflammatory injury and delayed recovery. Mechanistic studies revealed that uc.230 increased CUG-binding protein 1 (CUGBP1) by acting as a natural decoy RNA for miR-503, which interacts with Cugbp1 mRNA and represses its translation. These findings indicate that uc.230 sustains intestinal mucosal homeostasis by promoting epithelial renewal and barrier function and that it protects IECs against apoptosis by serving as a natural sponge for miR-503, thereby preserving CUGBP1 expression.

Authors

Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang

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Figure 1

Mucosal uc.230 expression associated with intestinal disease.

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Mucosal uc.230 expression associated with intestinal disease.
(A) Levels...
(A) Levels of mucosal uc.230 and uc.477 in the colons of mice treated with water (control) or 3% DSS for 5 days were measured using qPCR. Values are the means ± SEM (n = 8 or 9). *P < 0.05 compared with control mice. (B) Levels of mucosal uc.230 in the small intestines of mice fasted for 48 hours (n = 6). (C and D) Total levels and quantification of copy numbers of uc.230 in the colonic mucosa of patients with active UC were measured by qPCR (n = 8) and digital qPCR analyses (n = 5), respectively. *P < 0.05 compared with controls. (E) Levels of tissue uc.230 and uc.477 in the ileal mucosa of patients with CD (n = 5). (F) Levels of uc.230 in cultured Caco-2 cells exposed to DFMO (5 mmol/L) alone or plus putrescine (10 μmol/L) for 6 days. *P < 0.05 compared with control (n = 3). (G) Distribution of uc.230 in the mucosa of the small intestine as measured by RNA-FISH. Total original magnification, 200×. (H) Levels of cyto and nuclear uc.230, lncRNA NEAT1, and Gapdh mRNA in Caco-2 cells. Statistical significance was analyzed using unpaired, 2-tailed Student’s t test except for results in G and H. All experiments in G and H were repeated 3 times with similar results. Put, putrescine; cyto, cytoplasmic.

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