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Axon guidance receptor ROBO3 modulates subtype identity and prognosis via AXL-associated inflammatory network in pancreatic cancer
Niklas Krebs, Lukas Klein, Florian Wegwitz, Elisa Espinet, Hans Carlo Maurer, Mengyu Tu, Frederike Penz, Stefan Küffer, Xingbo Xu, Hanibal Bohnenberger, Silke Cameron, Marius Brunner, Albrecht Neesse, Uday Kishore, Elisabeth Hessmann, Andreas Trumpp, Philipp Ströbel, Rolf A. Brekken, Volker Ellenrieder, Shiv K. Singh
Niklas Krebs, Lukas Klein, Florian Wegwitz, Elisa Espinet, Hans Carlo Maurer, Mengyu Tu, Frederike Penz, Stefan Küffer, Xingbo Xu, Hanibal Bohnenberger, Silke Cameron, Marius Brunner, Albrecht Neesse, Uday Kishore, Elisabeth Hessmann, Andreas Trumpp, Philipp Ströbel, Rolf A. Brekken, Volker Ellenrieder, Shiv K. Singh
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Research Article Gastroenterology Therapeutics

Axon guidance receptor ROBO3 modulates subtype identity and prognosis via AXL-associated inflammatory network in pancreatic cancer

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Abstract

Metastatic pancreatic cancer (PDAC) has a poor clinical outcome with a 5-year survival rate below 3%. Recent transcriptome profiling of PDAC biopsies has identified 2 clinically distinct subtypes — the “basal-like” (BL) subtype with poor prognosis and therapy resistance compared with the less aggressive and drug-susceptible “classical” (CLA) subtype. However, the mechanistic events and environmental factors that promote the BL subtype identity are not very clear. Using preclinical models, patient-derived xenografts, and FACS-sorted PDAC patient biopsies, we report here that the axon guidance receptor, roundabout guidance receptor 3 (ROBO3), promotes the BL metastatic program via a potentially unique AXL/IL-6/phosphorylated STAT3 (p-STAT3) regulatory axis. RNA-Seq identified a ROBO3-mediated BL-specific gene program, while tyrosine kinase profiling revealed AXL as the key mediator of the p-STAT3 activation. CRISPR/dCas9-based ROBO3 silencing disrupted the AXL/p-STAT3 signaling axis, thereby halting metastasis and enhancing therapy sensitivity. Transcriptome analysis of resected patient tumors revealed that AXLhi neoplastic cells associated with the inflammatory stromal program. Combining AXL inhibitor and chemotherapy substantially restored a CLA phenotypic state and reduced disease aggressiveness. Thus, we conclude that a ROBO3-driven hierarchical network determines the inflammatory and prometastatic programs in a specific PDAC subtype.

Authors

Niklas Krebs, Lukas Klein, Florian Wegwitz, Elisa Espinet, Hans Carlo Maurer, Mengyu Tu, Frederike Penz, Stefan Küffer, Xingbo Xu, Hanibal Bohnenberger, Silke Cameron, Marius Brunner, Albrecht Neesse, Uday Kishore, Elisabeth Hessmann, Andreas Trumpp, Philipp Ströbel, Rolf A. Brekken, Volker Ellenrieder, Shiv K. Singh

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Figure 7

Inhibition of the ROBO3/AXL/p-STAT3 axis leads to a favorable outcome.

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Inhibition of the ROBO3/AXL/p-STAT3 axis leads to a favorable outcome.
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(A) Representative IHC staining for AXL in orthotopic LacZ control or dCas9-ROBO3 PANC1 tumors in NMRI-Foxn1nu/nu mice. Right: higher magnification of indicated area. Scale bar: 50 μm, magnified area (right panel), 10 μm. (B) Quantification of A. Scatterplots show intensity, given in AU/μm2 as average per animal and means ± SD as bar graphs. Statistical significance determined by Mann-Whitney test. LacZ, n = 7; dCas9-ROBO3, n = 7. (C) Immunoblot for Y705-phosphorylated STAT3 (p-STAT3), total STAT3, and β-actin, in BL PANC1 cells treated with indicated concentrations of BGB324 for 24 hours or vehicle control (VC). (D) Immunoblot for AXL and β-actin in BL PANC1 and CLA CAPAN1 cells. (C and D) Representative of n = 3 independent experiments; β-actin as loading control. (E) Cell viability of BL PANC1 and CLA CAPAN1 cells after treatment with BGB324 for 18 hours. Respective IC50 values are indicated. n = 3. (F–H) Cell viability of BL PANC1 (F), MiaPaCa2 (G), and GCDX5 (H) cells after treatment with indicated concentrations of gemcitabine (Gem) and BGB324 for 24 hours. n = 3. (I) In vivo experimental design for orthotopic implantation of BL PANC02 cells in immunocompetent C57BL/6 syngeneic mice (35). (J) Representative H&E and immunofluorescence (IF) staining for E-cadherin (ECAD) and IL-6 in mice bearing orthotopic PANC02 tumors treated with either Gem, BGB324, or a combination thereof, or VC. (K and L) Quantification for ECAD (K) and IL-6 (L) of J. Scatterplots show number of ECAD- or IL-6–positive cells (as percentage of DAPI-positive cells) as average per animal, with means ± SD as bar graphs. Statistical significance determined by unpaired Student’s t test. (K) VC, BGB324, combination, n = 3; Gem, n = 2. (L) VC, Gem, n = 2; BGB324, combination, n = 3. (M) Therapeutic vulnerability of the basal specific hierarchical ROBO3/AXL/p-STAT3 network by BGB324 treatment.

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