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Axon guidance receptor ROBO3 modulates subtype identity and prognosis via AXL-associated inflammatory network in pancreatic cancer
Niklas Krebs, Lukas Klein, Florian Wegwitz, Elisa Espinet, Hans Carlo Maurer, Mengyu Tu, Frederike Penz, Stefan Küffer, Xingbo Xu, Hanibal Bohnenberger, Silke Cameron, Marius Brunner, Albrecht Neesse, Uday Kishore, Elisabeth Hessmann, Andreas Trumpp, Philipp Ströbel, Rolf A. Brekken, Volker Ellenrieder, Shiv K. Singh
Niklas Krebs, Lukas Klein, Florian Wegwitz, Elisa Espinet, Hans Carlo Maurer, Mengyu Tu, Frederike Penz, Stefan Küffer, Xingbo Xu, Hanibal Bohnenberger, Silke Cameron, Marius Brunner, Albrecht Neesse, Uday Kishore, Elisabeth Hessmann, Andreas Trumpp, Philipp Ströbel, Rolf A. Brekken, Volker Ellenrieder, Shiv K. Singh
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Research Article Gastroenterology Therapeutics

Axon guidance receptor ROBO3 modulates subtype identity and prognosis via AXL-associated inflammatory network in pancreatic cancer

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Abstract

Metastatic pancreatic cancer (PDAC) has a poor clinical outcome with a 5-year survival rate below 3%. Recent transcriptome profiling of PDAC biopsies has identified 2 clinically distinct subtypes — the “basal-like” (BL) subtype with poor prognosis and therapy resistance compared with the less aggressive and drug-susceptible “classical” (CLA) subtype. However, the mechanistic events and environmental factors that promote the BL subtype identity are not very clear. Using preclinical models, patient-derived xenografts, and FACS-sorted PDAC patient biopsies, we report here that the axon guidance receptor, roundabout guidance receptor 3 (ROBO3), promotes the BL metastatic program via a potentially unique AXL/IL-6/phosphorylated STAT3 (p-STAT3) regulatory axis. RNA-Seq identified a ROBO3-mediated BL-specific gene program, while tyrosine kinase profiling revealed AXL as the key mediator of the p-STAT3 activation. CRISPR/dCas9-based ROBO3 silencing disrupted the AXL/p-STAT3 signaling axis, thereby halting metastasis and enhancing therapy sensitivity. Transcriptome analysis of resected patient tumors revealed that AXLhi neoplastic cells associated with the inflammatory stromal program. Combining AXL inhibitor and chemotherapy substantially restored a CLA phenotypic state and reduced disease aggressiveness. Thus, we conclude that a ROBO3-driven hierarchical network determines the inflammatory and prometastatic programs in a specific PDAC subtype.

Authors

Niklas Krebs, Lukas Klein, Florian Wegwitz, Elisa Espinet, Hans Carlo Maurer, Mengyu Tu, Frederike Penz, Stefan Küffer, Xingbo Xu, Hanibal Bohnenberger, Silke Cameron, Marius Brunner, Albrecht Neesse, Uday Kishore, Elisabeth Hessmann, Andreas Trumpp, Philipp Ströbel, Rolf A. Brekken, Volker Ellenrieder, Shiv K. Singh

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Figure 4

ROBO3 maintains STAT3 activity in high-grade PDAC tumors.

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ROBO3 maintains STAT3 activity in high-grade PDAC tumors.
(A) Immunoblot...
(A) Immunoblot for ROBO3, Y705-phosphorylated STAT3 (p-STAT3), and total STAT3, as well as β-actin as loading control, in LacZ control and dCas9-ROBO3 MiaPaCa2 cells. Representative of n = 3 independent experiments. (B) Differentially expressed gene (DEG) effect size of WNT10A across the indicated PDAC patient cohorts (10, 15, 27, 28). (C and D) Immunoblot for ROBO3, p-STAT3, STAT3, and WNT10A, as well as β-actin as loading control, in LacZ control and dCas9-ROBO3 PANC1 cells (C) as well as in ROBO3hi-classified GCDX5 cells (D) following siRNA-mediated knockdown of ROBO3 (siROBO3) or control siRNA (siCtrl). Representative of n = 3 independent experiments. (E) Representative immunofluorescence (IF) staining for p-STAT3 in primary LacZ and dCas9-ROBO3 orthotopic tumors. Scale bar: 50 μm. (F) Quantification of E. Scatterplots show the number of p-STAT3+ cells as percentage of DAPI+ cells per animal as well as means ± SD as bar graphs. Statistical significance was determined by Mann-Whitney test. LacZ, n = 5; dCas9-ROBO3, n = 6. (G) Representative H&E and IHC staining for ROBO3 and p-STAT3 of tumor microarray (TMA) spots of primary PDAC tissue derived from 62 human PDAC patients’ resected tissue, showing matched tumor tissues in each column. Scale bar: 200 μm, for magnified area, 50 μm. (H) Evaluation of ROBO3 intensity (scale 0–3) and p-STAT3 IHC immunoreactive scores (IRSs, scale 0–12) as well as grading of TMA spots. Top, all 62 patients were separated into low ROBO3 (intensity < 2, n = 28) and high ROBO3 (intensity ≥ 2, n = 34). Middle, grading in ROBO3lo (left) and ROBO3hi (right) patients. Low, G1–2; moderate, G2; high, G2–3/3. Bottom, p-STAT3 level in ROBO3lo (left) and ROBO3hi (right) patients. Low, IRS < 6; moderate, 6 ≤ IRS < 8; high, IRS ≥ 8. Histopathological grading performed by expert pathologists. A total of 1–3 TMA spots were evaluated and averaged per patient for intensity and IRSs. n = 62.

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