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A single-cell atlas of the myometrium in human parturition
Roger Pique-Regi, Roberto Romero, Valeria Garcia-Flores, Azam Peyvandipour, Adi L. Tarca, Errile Pusod, Jose Galaz, Derek Miller, Gaurav Bhatti, Robert Para, Tomi Kanninen, Ola Hadaya, Carmen Paredes, Kenichiro Motomura, Jeffrey R. Johnson, Eunjung Jung, Chaur-Dong Hsu, Stanley M. Berry, Nardhy Gomez-Lopez
Roger Pique-Regi, Roberto Romero, Valeria Garcia-Flores, Azam Peyvandipour, Adi L. Tarca, Errile Pusod, Jose Galaz, Derek Miller, Gaurav Bhatti, Robert Para, Tomi Kanninen, Ola Hadaya, Carmen Paredes, Kenichiro Motomura, Jeffrey R. Johnson, Eunjung Jung, Chaur-Dong Hsu, Stanley M. Berry, Nardhy Gomez-Lopez
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Research Article Cell biology Reproductive biology

A single-cell atlas of the myometrium in human parturition

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Abstract

Parturition is a well-orchestrated process characterized by increased uterine contractility, cervical ripening, and activation of the chorioamniotic membranes; yet, the transition from a quiescent to a contractile myometrium heralds the onset of labor. However, the cellular underpinnings of human parturition in the uterine tissues are still poorly understood. Herein, we performed a comprehensive study of the human myometrium during spontaneous term labor using single-cell RNA sequencing (scRNA-Seq). First, we established a single-cell atlas of the human myometrium and unraveled the cell type–specific transcriptomic activity modulated during labor. Major cell types included distinct subsets of smooth muscle cells, monocytes/macrophages, stromal cells, and endothelial cells, all of which communicated and participated in immune (e.g., inflammation) and nonimmune (e.g., contraction) processes associated with labor. Furthermore, integrating scRNA-Seq and microarray data with deconvolution of bulk gene expression highlighted the contribution of smooth muscle cells to labor-associated contractility and inflammatory processes. Last, myometrium-derived single-cell signatures can be quantified in the maternal whole-blood transcriptome throughout pregnancy and are enriched in women in labor, providing a potential means of noninvasively monitoring pregnancy and its complications. Together, our findings provide insights into the contributions of specific myometrial cell types to the biological processes that take place during term parturition.

Authors

Roger Pique-Regi, Roberto Romero, Valeria Garcia-Flores, Azam Peyvandipour, Adi L. Tarca, Errile Pusod, Jose Galaz, Derek Miller, Gaurav Bhatti, Robert Para, Tomi Kanninen, Ola Hadaya, Carmen Paredes, Kenichiro Motomura, Jeffrey R. Johnson, Eunjung Jung, Chaur-Dong Hsu, Stanley M. Berry, Nardhy Gomez-Lopez

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Figure 8

Comparative transcriptomic analysis of myometrial single-cell and bulk data at term in labor.

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Comparative transcriptomic analysis of myometrial single-cell and bulk d...
(A) Comparative analysis of labor-associated differentially expressed genes (DEGs) from myometrial tissues using single-cell (n = 11 in labor, red; n = 13 not in labor, blue) and bulk microarray analysis (n = 19 in labor, red; n = 20 not in labor, blue) as previously reported (Mittal et al. 2010) (46). (B) Bar plot showing numbers of labor-associated DEGs detected from single-cell analysis alone (light blue) compared to DEGs shared between single-cell and bulk analyses (dark blue). A 2-sided Wald’s test was performed based on negative binomial distribution. (C) Scatter plots showing the log2(Fold change) associated with labor in bulk microarray (x axis) and single-cell (y axis) analyses by cell type. DEGs shown were obtained using only single-cell analysis (light blue) or bulk analysis (lavender), shared by both single-cell and bulk analyses (dark blue), or not differentially expressed between the 2 groups (gray). Correlations between data sets were determined using 2-sided Spearman’s correlation test. Black dashes represent the regression line. (D) ClusterProfiler dot plot showing cell types enriched in labor-associated DEGs from bulk analysis, where dot size and color represent enrichment score and significance level, respectively. Significant cell types (q < 0.1) were identified based on GSEA (1-sided Kolmogorov-Smirnov test). (E) ClusterProfiler dot plot showing biological pathways from Wikipathways enriched for labor-associated DEGs combining smooth muscle cell-1 (SMC-1) single-cell analysis and deconvolution analysis of bulk gene expression data of laboring myometrial tissues. Significant pathways were identified based on overrepresentation analysis using the 1-sided Fisher’s exact test. Pathways with q < 0.1 were selected. The top 2 pathways most enriched during labor are in orange. ILC, innate lymphoid cell; LED, lymphoid endothelial decidual cell; NK cell, natural killer cell.

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