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Antisense oligonucleotide therapy for KCNT1 encephalopathy
Lisseth Estefania Burbano, Melody Li, Nikola Jancovski, Paymaan Jafar-Nejad, Kay Richards, Alicia Sedo, Armand Soriano, Ben Rollo, Linghan Jia, Elena V. Gazina, Sandra Piltz, Fatwa Adikusuma, Paul Q. Thomas, Helen Kopsidas, Frank Rigo, Christopher A. Reid, Snezana Maljevic, Steven Petrou
Lisseth Estefania Burbano, Melody Li, Nikola Jancovski, Paymaan Jafar-Nejad, Kay Richards, Alicia Sedo, Armand Soriano, Ben Rollo, Linghan Jia, Elena V. Gazina, Sandra Piltz, Fatwa Adikusuma, Paul Q. Thomas, Helen Kopsidas, Frank Rigo, Christopher A. Reid, Snezana Maljevic, Steven Petrou
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Research Article Genetics Neuroscience

Antisense oligonucleotide therapy for KCNT1 encephalopathy

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Abstract

Developmental and epileptic encephalopathies (DEEs) are characterized by pharmaco-resistant seizures with concomitant intellectual disability. Epilepsy of infancy with migrating focal seizures (EIMFS) is one of the most severe of these syndromes. De novo variants in ion channels, including gain-of-function variants in KCNT1, which encodes for sodium activated potassium channel protein KNa1.1, have been found to play a major role in the etiology of EIMFS. Here, we test a potential precision therapeutic approach in KCNT1-associated DEE using a gene-silencing antisense oligonucleotide (ASO) approach. We generated a mouse model carrying the KCNT1 p.P924L pathogenic variant; only the homozygous animals presented with the frequent, debilitating seizures and developmental compromise that are seen in patients. After a single intracerebroventricular bolus injection of a Kcnt1 gapmer ASO in symptomatic mice at postnatal day 40, seizure frequency was significantly reduced, behavioral abnormalities improved, and overall survival was extended compared with mice treated with a control ASO (nonhybridizing sequence). ASO administration at neonatal age was also well tolerated and effective in controlling seizures and extending the life span of treated animals. The data presented here provide proof of concept for ASO-based gene silencing as a promising therapeutic approach in KCNT1-associated epilepsies.

Authors

Lisseth Estefania Burbano, Melody Li, Nikola Jancovski, Paymaan Jafar-Nejad, Kay Richards, Alicia Sedo, Armand Soriano, Ben Rollo, Linghan Jia, Elena V. Gazina, Sandra Piltz, Fatwa Adikusuma, Paul Q. Thomas, Helen Kopsidas, Frank Rigo, Christopher A. Reid, Snezana Maljevic, Steven Petrou

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Figure 6

Neonatal administration of Kcnt1 ASO in the L/L mouse model.

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Neonatal administration of Kcnt1 ASO in the L/L mouse model.
(A) Dose-re...
(A) Dose-response curve for +/+ mice injected at P2 (n = 3–11 per dose). (B) Survival curve showing prolonged life span of Kcnt1 ASO–treated mice (P < 0.0001). Control ASO produced a small improvement (P = 0.003, log-rank test) (untreated n = 36; control ASO n = 23; Kcnt1 ASO 3.4 μg n = 17). (C) Weight at P40 (P = 0.016, +/+ n = 28, untreated n = 17, control ASO 50 μg n = 14, Kcnt1 ASO 3.4 μg n = 17). (D) Nesting score (P = 0.0001, untreated n = 8; control ASO 50 μg n = 9; Kcnt1 ASO 3.4 μg n = 15). (E) Seizure frequency (P < 0.0001, control ASO 50 μg n = 15, Kcnt1 ASO 3.4 μg n = 17). (F) Ambulatory distance (+/+ n = 12, untreated n = 25, Kcnt1 ASO 3.4 μg n = 17). (G) Time spent in open arms of EPM (+/+ n = 10, untreated n = 15, Kcnt1 ASO 3.4 μg n = 17). Mann-Whitney test (C–G). Data are presented in a box-and-whisker plot with maximal and minimal data points (whiskers) and median (line). (H) Redosing at P30 further reduced Kcnt1 mRNA (Kcnt1 ASO 3.4 μg n = 3; Kcnt1 ASO 3.4 μg + control ASO 500 μg n = 3; Kcnt1 ASO 3.4 μg + Kcnt1 ASO 35 μg n = 2; Kcnt1 ASO 3.4 μg + Kcnt1 ASO 75 μg n = 3). (I) Survival curve for L/L mice redosed with ED80 at P167 (untreated n = 36; ED80 reinjected n = 4). (J) Nesting score of L/L mice reinjected with ED80 (n = 4); P < 0.0001 (1-way ANOVA with Dunnett’s multiple comparisons test) for P40 versus P165.

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