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Antisense oligonucleotide therapy for KCNT1 encephalopathy
Lisseth Estefania Burbano, Melody Li, Nikola Jancovski, Paymaan Jafar-Nejad, Kay Richards, Alicia Sedo, Armand Soriano, Ben Rollo, Linghan Jia, Elena V. Gazina, Sandra Piltz, Fatwa Adikusuma, Paul Q. Thomas, Helen Kopsidas, Frank Rigo, Christopher A. Reid, Snezana Maljevic, Steven Petrou
Lisseth Estefania Burbano, Melody Li, Nikola Jancovski, Paymaan Jafar-Nejad, Kay Richards, Alicia Sedo, Armand Soriano, Ben Rollo, Linghan Jia, Elena V. Gazina, Sandra Piltz, Fatwa Adikusuma, Paul Q. Thomas, Helen Kopsidas, Frank Rigo, Christopher A. Reid, Snezana Maljevic, Steven Petrou
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Research Article Genetics Neuroscience

Antisense oligonucleotide therapy for KCNT1 encephalopathy

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Abstract

Developmental and epileptic encephalopathies (DEEs) are characterized by pharmaco-resistant seizures with concomitant intellectual disability. Epilepsy of infancy with migrating focal seizures (EIMFS) is one of the most severe of these syndromes. De novo variants in ion channels, including gain-of-function variants in KCNT1, which encodes for sodium activated potassium channel protein KNa1.1, have been found to play a major role in the etiology of EIMFS. Here, we test a potential precision therapeutic approach in KCNT1-associated DEE using a gene-silencing antisense oligonucleotide (ASO) approach. We generated a mouse model carrying the KCNT1 p.P924L pathogenic variant; only the homozygous animals presented with the frequent, debilitating seizures and developmental compromise that are seen in patients. After a single intracerebroventricular bolus injection of a Kcnt1 gapmer ASO in symptomatic mice at postnatal day 40, seizure frequency was significantly reduced, behavioral abnormalities improved, and overall survival was extended compared with mice treated with a control ASO (nonhybridizing sequence). ASO administration at neonatal age was also well tolerated and effective in controlling seizures and extending the life span of treated animals. The data presented here provide proof of concept for ASO-based gene silencing as a promising therapeutic approach in KCNT1-associated epilepsies.

Authors

Lisseth Estefania Burbano, Melody Li, Nikola Jancovski, Paymaan Jafar-Nejad, Kay Richards, Alicia Sedo, Armand Soriano, Ben Rollo, Linghan Jia, Elena V. Gazina, Sandra Piltz, Fatwa Adikusuma, Paul Q. Thomas, Helen Kopsidas, Frank Rigo, Christopher A. Reid, Snezana Maljevic, Steven Petrou

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Figure 1

Phenotype of the Kcnt1 L/L mouse model.

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Phenotype of the Kcnt1 L/L mouse model.
(A) Difference in size at P21 of...
(A) Difference in size at P21 of L/L mice (red arrow) compared with their L/+ and +/+ littermates. (B) Body weight is significantly reduced in L/L mice compared with their +/+ littermates at weaning age (Kruskal-Wallis test, followed by Dunn’s post hoc analysis; +/+ n = 15, L/+ n = 21, L/L n = 18). Data are presented in a box-and-whisker plot with maximal and minimal data points (whiskers) and median (line). (C) Life span is shortened in L/L mice with a median survival of 43 days (Kaplan-Meier curve, log-rank test P < 0.0001; +/+ n = 15, L/+ n = 15, and L/L n = 35). (D) Representative ECoG trace of ictal activity and interictal spikes in the L/L mice. Top: Acute interictal spikes. Bottom: Seizures can be preceded by an increase in frequency of acute interictal spikes. Spontaneous tonic-clonic seizures correlated with fast, high-amplitude signal, followed by electric suppression (black arrow). (E) Acute high-amplitude (>500 μV) spikes are present in the L/L mice, with a median of 1,470 spikes in 24 hours (P = 0.03, Kruskal-Wallis test, followed by Dunn’s post hoc analysis, n = 3 for each genotype). (F) Seizure frequency over 72 hours (+/+ n = 3, L/+ n = 3, L/L n = 6; median seizure frequency for L/L of 23 events. Kruskal-Wallis test, followed by Dunn’s post hoc analysis P = 0.024).

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