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Single hepatocytes show persistence and transcriptional inactivity of hepatitis B
Ashwin Balagopal, Tanner Grudda, Ruy M. Ribeiro, Yasmeen S. Saad, Hyon S. Hwang, Jeffrey Quinn, Michael Murphy, Kathleen Ward, Richard K. Sterling, Yang Zhang, Alan S. Perelson, Mark S. Sulkowski, William O. Osburn, Chloe L. Thio
Ashwin Balagopal, Tanner Grudda, Ruy M. Ribeiro, Yasmeen S. Saad, Hyon S. Hwang, Jeffrey Quinn, Michael Murphy, Kathleen Ward, Richard K. Sterling, Yang Zhang, Alan S. Perelson, Mark S. Sulkowski, William O. Osburn, Chloe L. Thio
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Research Article Hepatology Infectious disease

Single hepatocytes show persistence and transcriptional inactivity of hepatitis B

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Abstract

There is no cure for the more than 270 million people chronically infected with HBV. Nucleos(t)ide analogs (NUCs), the mainstay of anti-HBV treatment, block HBV reverse transcription. NUCs do not eliminate the intranuclear covalently closed circular DNA (cccDNA), from which viral RNAs, including pregenomic RNA (pgRNA), are transcribed. A key gap in designing a cure is understanding how NUCs affect HBV replication and transcription because serum markers yield an incomplete view of intrahepatic HBV. We applied single-cell laser capture microdissection and droplet digital PCR to paired liver biopsies collected from 5 HBV/HIV-coinfected persons who took NUCs over 2–4 years. From biopsy 1 to 2, proportions of HBV-infected hepatocytes declined with adherence to NUC treatment (P < 0.05); we extrapolated that eradication of HBV will take over 10 decades with NUCs in these participants. In individual hepatocytes, pgRNA levels diminished 28- to 73-fold during NUC treatment, corresponding with decreased tissue HBV core antigen staining (P < 0.01). In 4 out of 5 participants, hepatocytes with cccDNA but undetectable pgRNA (transcriptionally inactive) were present, and these were enriched in 3 participants during NUC treatment. Further work to unravel mechanisms of cccDNA transcriptional inactivation may lead to therapies that can achieve this in all hepatocytes, resulting in a functional cure.

Authors

Ashwin Balagopal, Tanner Grudda, Ruy M. Ribeiro, Yasmeen S. Saad, Hyon S. Hwang, Jeffrey Quinn, Michael Murphy, Kathleen Ward, Richard K. Sterling, Yang Zhang, Alan S. Perelson, Mark S. Sulkowski, William O. Osburn, Chloe L. Thio

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Figure 4

HBV core protein expression is reduced during NUC treatment and corresponds with the intracellular transcriptional index.

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HBV core protein expression is reduced during NUC treatment and correspo...
(A) IHC was used to stain for HBcAg and HBsAg in first and second biopsies for all 5 participants. Shown are representative micrographs for HB2, alongside hematoxylin and eosin staining. (B) The amount of staining for HBcAg was quantified in each biopsy by a hepatopathologist who was blinded to participant identity (Supplemental Table 4). Shown is the correlation between the midpoint percentage of HBcAg-stained cells and the percentage of hepatocytes that contained detectable pgRNA, indexed by participants and time point. Data for HB3 biopsy 2 are not shown because less than 30% of tissue was available for staining; this slide was not further analyzed. Spearman’s correlation coefficients and associated P values are shown in B.

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