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LIN28B induces a differentiation program through CDX2 in colon cancer
Kensuke Suzuki, Yasunori Masuike, Rei Mizuno, Uma M. Sachdeva, Priya Chatterji, Sarah F. Andres, Wenping Sun, Andres J. Klein-Szanto, Sepideh Besharati, Helen E. Remotti, Michael P. Verzi, Anil K. Rustgi
Kensuke Suzuki, Yasunori Masuike, Rei Mizuno, Uma M. Sachdeva, Priya Chatterji, Sarah F. Andres, Wenping Sun, Andres J. Klein-Szanto, Sepideh Besharati, Helen E. Remotti, Michael P. Verzi, Anil K. Rustgi
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Research Article Cell biology Gastroenterology

LIN28B induces a differentiation program through CDX2 in colon cancer

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Abstract

Most colorectal cancers (CRCs) are moderately differentiated or well differentiated, a status that is preserved even in metastatic tumors. However, the molecular mechanisms underlying CRC differentiation remain to be elucidated. Herein, we unravel a potentially novel posttranscriptional regulatory mechanism via a LIN28B/CDX2 signaling axis that plays a critical role in mediating CRC differentiation. Owing to a large number of mRNA targets, the mRNA-binding protein LIN28B has diverse functions in development, metabolism, tissue regeneration, and tumorigenesis. Our RNA-binding protein IP (RIP) assay revealed that LIN28B directly binds CDX2 mRNA, which is a pivotal homeobox transcription factor in normal intestinal epithelial cell identity and differentiation. Furthermore, LIN28B overexpression resulted in enhanced CDX2 expression to promote differentiation in subcutaneous xenograft tumors generated from CRC cells and metastatic tumor colonization through mesenchymal-epithelial transition in CRC liver metastasis mouse models. A ChIP sequence for CDX2 identified α-methylacyl-CoA racemase (AMACR) as a potentially novel transcriptional target of CDX2 in the context of LIN28B overexpression. We also found that AMACR enhanced intestinal alkaline phosphatase activity, which is known as a key component of intestinal differentiation, through the upregulation of butyric acid. Overall, we demonstrated that LIN28B promotes CRC differentiation through the CDX2/AMACR axis.

Authors

Kensuke Suzuki, Yasunori Masuike, Rei Mizuno, Uma M. Sachdeva, Priya Chatterji, Sarah F. Andres, Wenping Sun, Andres J. Klein-Szanto, Sepideh Besharati, Helen E. Remotti, Michael P. Verzi, Anil K. Rustgi

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Figure 5

CDX2 ChIP-Seq identifies AMACR as a novel target for the LIN28B/CDX2 axis.

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CDX2 ChIP-Seq identifies AMACR as a novel target for the LIN28B/CDX2 axi...
(A) Experimental design of ChIP-Seq. (B) Heatmaps of CDX2 ChIP-Seq in Caco-2 cells with control or LIN28B KD. (C) Left: peak analysis annotated by promoter transcription starting sites; gray columns indicate the number of significant higher peaks compared with the other phenotype. Right: the gene list of peak annotation analysis. (D) Significant upregulated KEGG pathway analysis related to metabolism in Caco2 control cells compared with Caco2 LIN28B KD cells. (E) Significant upregulated gene ontology term analysis related to fatty acid metabolism in Caco2 control cells compared with Caco2 LIN28B KD cells. (F) CDX2 ChIP-Seq tag counts at the site of AMACR TSS promoter. The binomial test was performed with P < 0.05 as statistically significant (A and C–E). CDX2 binding peaks were identified by applying FDR cutoff 0.05.

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