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Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome
Giovanni A. Carosso, Leandros Boukas, Jonathan J. Augustin, Ha Nam Nguyen, Briana L. Winer, Gabrielle H. Cannon, Johanna D. Robertson, Li Zhang, Kasper D. Hansen, Loyal A. Goff, Hans T. Bjornsson
Giovanni A. Carosso, Leandros Boukas, Jonathan J. Augustin, Ha Nam Nguyen, Briana L. Winer, Gabrielle H. Cannon, Johanna D. Robertson, Li Zhang, Kasper D. Hansen, Loyal A. Goff, Hans T. Bjornsson
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Research Article Genetics Neuroscience

Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome

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Abstract

Chromatin modifiers act to coordinate gene expression changes critical to neuronal differentiation from neural stem/progenitor cells (NSPCs). Lysine-specific methyltransferase 2D (KMT2D) encodes a histone methyltransferase that promotes transcriptional activation and is frequently mutated in cancers and in the majority (>70%) of patients diagnosed with the congenital, multisystem intellectual disability disorder Kabuki syndrome 1 (KS1). Critical roles for KMT2D are established in various non-neural tissues, but the effects of KMT2D loss in brain cell development have not been described. We conducted parallel studies of proliferation, differentiation, transcription, and chromatin profiling in KMT2D-deficient human and mouse models to define KMT2D-regulated functions in neurodevelopmental contexts, including adult-born hippocampal NSPCs in vivo and in vitro. We report cell-autonomous defects in proliferation, cell cycle, and survival, accompanied by early NSPC maturation in several KMT2D-deficient model systems. Transcriptional suppression in KMT2D-deficient cells indicated strong perturbation of hypoxia-responsive metabolism pathways. Functional experiments confirmed abnormalities of cellular hypoxia responses in KMT2D-deficient neural cells and accelerated NSPC maturation in vivo. Together, our findings support a model in which loss of KMT2D function suppresses expression of oxygen-responsive gene programs important to neural progenitor maintenance, resulting in precocious neuronal differentiation in a mouse model of KS1.

Authors

Giovanni A. Carosso, Leandros Boukas, Jonathan J. Augustin, Ha Nam Nguyen, Briana L. Winer, Gabrielle H. Cannon, Johanna D. Robertson, Li Zhang, Kasper D. Hansen, Loyal A. Goff, Hans T. Bjornsson

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Figure 3

KS1 patient–derived cells recapitulate KMT2D-associated defects in proliferation and cell cycle.

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KS1 patient–derived cells recapitulate KMT2D-associated defects in proli...
(A) Representative immunostaining of iPSCs derived from a KMT2D+/– KS1 patient (c.7903C>T:p.R2635*) and healthy controls. (B) Proliferating cells were pulsed with EdU for 30 minutes and quantified by flow cytometry. One-way ANOVA. (C) Cell cycle analysis in iPSCs, discriminating 2N and 4N DNA content (G1/G0 and G2/M, respectively) by flow cytometry using DAPI fluorescence. One-way ANOVA. (D) Representative immunostaining of NES-expressing NSPCs induced from iPSCs of KS1 patient and controls. (E) EdU pulse assay quantified by flow cytometry. One-way ANOVA. (F) Cell cycle defect analysis in NSPCs. One-way ANOVA. (G) Quantification of dying cells by flow cytometric scatter profiles in KS1 patient and control cells. One-tailed Student’s t test. (H) Synchronized G2/M exit analysis by flow cytometry in fibroblasts from KS1 patients (KS1-1, KS1-2, KS1-3) and healthy controls (controls 3 and 4), in triplicate per cell line. Cells were enriched for G2/M phase using nocodazole and analyzed by DAPI fluorescence to quantify G2/M phase cell fractions at 0 and 3 hours after release. One-tailed Student’s t test. Bars indicate mean ± SEM. Boxes indicate mean ± interquartile range; whiskers indicate minima and maxima. (*P < 0.05, **P < 0.01, and ***P < 0.001.) Scale bars: 100 μm (A), 20 μm (D).

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