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Coupling AAV-mediated promoterless gene targeting to SaCas9 nuclease to efficiently correct liver metabolic diseases
Alessia De Caneva, Fabiola Porro, Giulia Bortolussi, Riccardo Sola, Michela Lisjak, Adi Barzel, Mauro Giacca, Mark A. Kay, Kristian Vlahoviček, Lorena Zentilin, Andrés F. Muro
Alessia De Caneva, Fabiola Porro, Giulia Bortolussi, Riccardo Sola, Michela Lisjak, Adi Barzel, Mauro Giacca, Mark A. Kay, Kristian Vlahoviček, Lorena Zentilin, Andrés F. Muro
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Research Article Genetics Hepatology

Coupling AAV-mediated promoterless gene targeting to SaCas9 nuclease to efficiently correct liver metabolic diseases

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Abstract

Nonintegrative AAV-mediated gene therapy in the liver is effective in adult patients but faces limitations in pediatric settings because of episomal DNA loss during hepatocyte proliferation. Gene targeting is a promising approach as it results in the permanent modification of the genome. We previously rescued neonatal lethality in Crigler-Najjar mice by inserting a promoterless human uridine glucuronosyl transferase A1 (UGT1A1) cDNA in exon 14 of the albumin gene, without the use of nucleases. To increase the recombination rate and therapeutic efficacy, we used CRISPR/SaCas9. Neonatal mice were transduced with 2 AAVs: one expressing the SaCas9 and sgRNA and one containing a promoterless cDNA flanked by albumin homology regions. Targeting efficiency increased approximately 26-fold with an EGFP reporter cDNA, reaching up to 24% of EGFP-positive hepatocytes. Next, we fully corrected the diseased phenotype of Crigler-Najjar mice by targeting the hUGT1A1 cDNA. Treated mice had normal plasma bilirubin up to 10 months after administration, hUGT1A1 protein levels were approximately 6-fold higher than in WT liver, with a 90-fold increase in recombination rate. Liver histology, inflammatory markers, and plasma albumin were normal in treated mice, with no off-targets in predicted sites. Thus, the improved efficacy and reassuring safety profile support the potential application of the proposed approach to other liver diseases.

Authors

Alessia De Caneva, Fabiola Porro, Giulia Bortolussi, Riccardo Sola, Michela Lisjak, Adi Barzel, Mauro Giacca, Mark A. Kay, Kristian Vlahoviček, Lorena Zentilin, Andrés F. Muro

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Figure 4

Long-lasting reduction of plasma bilirubin to WT levels in Crigler-Najjar mice.

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Long-lasting reduction of plasma bilirubin to WT levels in Crigler-Najja...
(A) Scheme of the experimental design. Ugt1–/– newborn mice were i.v. transduced at P2 with rAAV8-donor-hUGT1A1 alone (HR; 2.0E11 vg/mouse) or in combination with rAAV8-SaCas9-sgRNA8, using 2 different SaCas9 doses (low, HDR L; or high, HDR H; 6.0E10 and 2.0E11 vg/mouse, respectively). Mice were maintained under phototherapy (PT) from birth to P8 (P0–P8 PT). Blood was collected at the indicated time points and mice were sacrificed at M10. Liver and brain were extracted. (B) Kaplan-Meier survival curve. All rAAV8-treated mice survived, whereas all mutant mice treated only with PT up to P8 (n = 3) died before P19. Long-rank (Mantel-Cox) test, **P = 0.0020. n = 3 per rAAV8-untreated, n = 8 per rAAV8 treated. (C) Total bilirubin (TB) levels were determined in plasma at 1, 4, 5, and 10 months. TB levels of mice treated with both rAAV8 vectors (HDR L and HDR H) were similar to WT/HET. The gray area in the graph indicates the range of TB levels resulting in brain damage and death. Two-way ANOVA: interaction, ***P = 0.0010; treatment, ***P < 0.0001; time, **P = 0.0015. Bonferroni post-test, HR versus HDR L/HDR H, ***. n = 3 per HR and HDR H; n = 2 per HDR L. The uncut gels are provided in Supplemental Figure 7. (D) WB analysis of liver protein extracts using an anti-Ugt1 antibody with human and mouse specificity. Short and long expositions are shown. Quantification of the WB. One-way ANOVA, **P = 0.0036. Bonferroni’s multiple comparison test: Untr vs. HDR H; **, HR vs. HDR H, **. n = 3 per WT and HDR H, n = 2 per Untr, HDR L. ND, not detected. **P < 0.01.

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