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Noncovalent inhibitors reveal BTK gatekeeper and auto-inhibitory residues that control its transforming activity
Shenqiu Wang, Sayan Mondal, Chunying Zhao, Marjan Berishaj, Phani Ghanakota, Connie Lee Batlevi, Ahmet Dogan, Venkatraman E. Seshan, Robert Abel, Michael R. Green, Anas Younes, Hans-Guido Wendel
Shenqiu Wang, Sayan Mondal, Chunying Zhao, Marjan Berishaj, Phani Ghanakota, Connie Lee Batlevi, Ahmet Dogan, Venkatraman E. Seshan, Robert Abel, Michael R. Green, Anas Younes, Hans-Guido Wendel
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Research Article Hematology Oncology

Noncovalent inhibitors reveal BTK gatekeeper and auto-inhibitory residues that control its transforming activity

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Abstract

Inhibition of Bruton tyrosine kinase (BTK) is a breakthrough therapy for certain B cell lymphomas and B cell chronic lymphatic leukemia. Covalent BTK inhibitors (e.g., ibrutinib) bind to cysteine C481, and mutations of this residue confer clinical resistance. This has led to the development of noncovalent BTK inhibitors that do not require binding to cysteine C481. These new compounds are now entering clinical trials. In a systematic BTK mutagenesis screen, we identify residues that are critical for the activity of noncovalent inhibitors. These include a gatekeeper residue (T474) and mutations in the kinase domain. Strikingly, co-occurrence of gatekeeper and kinase domain lesions (L512M, E513G, F517L, L547P) in cis results in a 10- to 15-fold gain of BTK kinase activity and de novo transforming potential in vitro and in vivo. Computational BTK structure analyses reveal how these lesions disrupt an intramolecular mechanism that attenuates BTK activation. Our findings anticipate clinical resistance mechanisms to a new class of noncovalent BTK inhibitors and reveal intramolecular mechanisms that constrain BTK’s transforming potential.

Authors

Shenqiu Wang, Sayan Mondal, Chunying Zhao, Marjan Berishaj, Phani Ghanakota, Connie Lee Batlevi, Ahmet Dogan, Venkatraman E. Seshan, Robert Abel, Michael R. Green, Anas Younes, Hans-Guido Wendel

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Figure 3

Structural modeling of the binding to BTK L528W and T474M mutants.

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Structural modeling of the binding to BTK L528W and T474M mutants.
(A) T...
(A) The structural context of ibrutinib binding in BTK W528 compared with L528. The BTK protein is shown in cartoon representation. Ibrutinib and its covalent attachment point C481, as well as L528/W528, are highlighted in all-atom CPK representation. The mutation of L528 to W528 sterically destabilizes interactions of ibrutinib with C481. (B) Structural modeling of wild-type BTK (T474) and BTK T474M mutation (M474) binding to RN486. The H-bonded network involving K430, T474, and G414 backbone is shown in yellow dotted lines and highlighted within the red circle. This water network is disrupted by the mutation of T474 to M474.

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ISSN 2379-3708

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