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Systems genetics identifies a macrophage cholesterol network associated with physiological wound healing
Marta Bagnati, Aida Moreno-Moral, Jeong-Hun Ko, Jérôme Nicod, Nathan Harmston, Martha Imprialou, Laurence Game, Jesus Gil, Enrico Petretto, Jacques Behmoaras
Marta Bagnati, Aida Moreno-Moral, Jeong-Hun Ko, Jérôme Nicod, Nathan Harmston, Martha Imprialou, Laurence Game, Jesus Gil, Enrico Petretto, Jacques Behmoaras
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Research Article Dermatology Inflammation

Systems genetics identifies a macrophage cholesterol network associated with physiological wound healing

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Abstract

Among other cells, macrophages regulate the inflammatory and reparative phases during wound healing but genetic determinants and detailed molecular pathways that modulate these processes are not fully elucidated. Here, we took advantage of normal variation in wound healing in 1,378 genetically outbred mice, and carried out macrophage RNA-sequencing profiling of mice with extreme wound healing phenotypes (i.e., slow and fast healers, n = 146 in total). The resulting macrophage coexpression networks were genetically mapped and led to the identification of a unique module under strong trans-acting genetic control by the Runx2 locus. This macrophage-mediated healing network was specifically enriched for cholesterol and fatty acid biosynthetic processes. Pharmacological blockage of fatty acid synthesis with cerulenin resulted in delayed wound healing in vivo, and increased macrophage infiltration in the wounded skin, suggesting the persistence of an unresolved inflammation. We show how naturally occurring sequence variation controls transcriptional networks in macrophages, which in turn regulate specific metabolic pathways that could be targeted in wound healing.

Authors

Marta Bagnati, Aida Moreno-Moral, Jeong-Hun Ko, Jérôme Nicod, Nathan Harmston, Martha Imprialou, Laurence Game, Jesus Gil, Enrico Petretto, Jacques Behmoaras

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Figure 2

Strong association of a macrophage-mediated healing network with the Runx2/Supt3h locus.

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Strong association of a macrophage-mediated healing network with the Run...
(A) Genome-wide mapping results from multivariate Bayesian mapping of 40 macrophage coexpression modules in the outbred mouse population showing fast and slow healing (n = 146). The coexpression module with the highest association (Bayes factor [BF] of 211,096) is M30 (also designated as macrophage-mediated healing network, MMHN) through SNP (chr17_45131552). The results for the top 5 modules with strongest genetic association are presented in a table (left). (B) M30 is associated with chr17_45131552 on mouse chromosome 17, which is located within a well-conserved and tissue invariant (Supplemental Figure 1) topologically associated domain (TAD) containing Runx2 and Supt3h in mouse embryonic stem cells. As TADs can represent the regulatory domain of the genes they contain, the location of chr17_45131552 within this TAD implicates it in the transcriptional regulation of either Runx2 or Supt3h. See supplemental methods for more details.

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ISSN 2379-3708

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