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MYSM1 maintains ribosomal protein gene expression in hematopoietic stem cells to prevent hematopoietic dysfunction
Jad I. Belle, HanChen Wang, Amanda Fiore, Jessica C. Petrov, Yun Hsiao Lin, Chu-Han Feng, Thi Tuyet Mai Nguyen, Jacky Tung, Philippe M. Campeau, Uta Behrends, Theresa Brunet, Gloria Sarah Leszinski, Philippe Gros, David Langlais, Anastasia Nijnik
Jad I. Belle, HanChen Wang, Amanda Fiore, Jessica C. Petrov, Yun Hsiao Lin, Chu-Han Feng, Thi Tuyet Mai Nguyen, Jacky Tung, Philippe M. Campeau, Uta Behrends, Theresa Brunet, Gloria Sarah Leszinski, Philippe Gros, David Langlais, Anastasia Nijnik
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Research Article Hematology Stem cells

MYSM1 maintains ribosomal protein gene expression in hematopoietic stem cells to prevent hematopoietic dysfunction

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Abstract

Ribosomopathies are congenital disorders caused by mutations in the genes encoding ribosomal and other functionally related proteins. They are characterized by anemia, other hematopoietic and developmental abnormalities, and p53 activation. Ribosome assembly requires coordinated expression of many ribosomal protein (RP) genes; however, the regulation of RP gene expression, especially in hematopoietic stem cells (HSCs), remains poorly understood. MYSM1 is a transcriptional regulator essential for HSC function and hematopoiesis. We established that HSC dysfunction in Mysm1 deficiency is driven by p53; however, the mechanisms of p53 activation remained unclear. Here, we describe the transcriptome of Mysm1-deficient mouse HSCs and identify MYSM1 genome-wide DNA binding sites. We establish a direct role for MYSM1 in RP gene expression and show a reduction in protein synthesis in Mysm1–/– HSCs. Loss of p53 in mice fully rescues Mysm1–/– anemia phenotype but not RP gene expression, indicating that RP gene dysregulation is a direct outcome of Mysm1 deficiency and an upstream mediator of Mysm1–/– phenotypes through p53 activation. We characterize a patient with a homozygous nonsense MYSM1 gene variant, and we demonstrate reduced protein synthesis and increased p53 levels in patient hematopoietic cells. Our work provides insights into the specialized mechanisms regulating RP gene expression in HSCs and establishes a common etiology of MYSM1 deficiency and ribosomopathy syndromes.

Authors

Jad I. Belle, HanChen Wang, Amanda Fiore, Jessica C. Petrov, Yun Hsiao Lin, Chu-Han Feng, Thi Tuyet Mai Nguyen, Jacky Tung, Philippe M. Campeau, Uta Behrends, Theresa Brunet, Gloria Sarah Leszinski, Philippe Gros, David Langlais, Anastasia Nijnik

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Figure 8

Characterization of the patient with homozygous nonsense mutation in MYSM1 gene.

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Characterization of the patient with homozygous nonsense mutation in MYS...
(A) Family pedigree with segregation of MYSM1 variant. Index patient (II-4) with transfusion dependent anemia was born from a consanguinous union; M/M, homozygous carrier; WT/M, heterozygous carrier; n.h., not homozygous; diagonal line, deceased individual. The deceased brother (died at the age of 9 months due to a mitochondrial DNA depletion syndrome) was not available (N/A) for testing. (B) Sanger sequence chromatograms of detected variant c.869C>G (NM_001085487.2) in MYSM1; homozygous in index patient, heterozygous in each parent. (C) Longitudinal hematological assessments of the patient, demonstrating anemia phenotype associated with reduced hemoglobin (Hb), hematocrit, and erythrocytes. Timing of erythrocyte transfusions is indicated and is the likely cause of the variations in the data. (D) Reduced frequency of neutrophils (CD16+CD66b+), basophils (CD123+MHCII–), classical monocytes (CD14+MHCII+), and B cells (CD19+CD20+) in the patient blood. Plots are gated on live cells; percentage of cells within each gate is shown with the control figure representing mean ± SD of 3 independent biological samples and the patient figure representing an average of 3 technical replicates from a single blood sample. Full data on all blood cell types in provided in Supplemental Table 7. (E and F) Representative flow cytometry histograms showing reduction in protein synthesis rate and increase in p53 protein level in the index patient; the plots are gated on Lin–CD38+CD34– hematopoietic progenitor cells, with full data on all blood cell populations provided in Supplemental Table 8. Protein synthesis rate is measured using the O-propargyl-puromycin (OPP) incorporation method; control samples represent OPP-untreated but stained cells or cells stained with an isotype-control antibody.

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