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MYSM1 maintains ribosomal protein gene expression in hematopoietic stem cells to prevent hematopoietic dysfunction
Jad I. Belle, HanChen Wang, Amanda Fiore, Jessica C. Petrov, Yun Hsiao Lin, Chu-Han Feng, Thi Tuyet Mai Nguyen, Jacky Tung, Philippe M. Campeau, Uta Behrends, Theresa Brunet, Gloria Sarah Leszinski, Philippe Gros, David Langlais, Anastasia Nijnik
Jad I. Belle, HanChen Wang, Amanda Fiore, Jessica C. Petrov, Yun Hsiao Lin, Chu-Han Feng, Thi Tuyet Mai Nguyen, Jacky Tung, Philippe M. Campeau, Uta Behrends, Theresa Brunet, Gloria Sarah Leszinski, Philippe Gros, David Langlais, Anastasia Nijnik
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Research Article Hematology Stem cells

MYSM1 maintains ribosomal protein gene expression in hematopoietic stem cells to prevent hematopoietic dysfunction

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Abstract

Ribosomopathies are congenital disorders caused by mutations in the genes encoding ribosomal and other functionally related proteins. They are characterized by anemia, other hematopoietic and developmental abnormalities, and p53 activation. Ribosome assembly requires coordinated expression of many ribosomal protein (RP) genes; however, the regulation of RP gene expression, especially in hematopoietic stem cells (HSCs), remains poorly understood. MYSM1 is a transcriptional regulator essential for HSC function and hematopoiesis. We established that HSC dysfunction in Mysm1 deficiency is driven by p53; however, the mechanisms of p53 activation remained unclear. Here, we describe the transcriptome of Mysm1-deficient mouse HSCs and identify MYSM1 genome-wide DNA binding sites. We establish a direct role for MYSM1 in RP gene expression and show a reduction in protein synthesis in Mysm1–/– HSCs. Loss of p53 in mice fully rescues Mysm1–/– anemia phenotype but not RP gene expression, indicating that RP gene dysregulation is a direct outcome of Mysm1 deficiency and an upstream mediator of Mysm1–/– phenotypes through p53 activation. We characterize a patient with a homozygous nonsense MYSM1 gene variant, and we demonstrate reduced protein synthesis and increased p53 levels in patient hematopoietic cells. Our work provides insights into the specialized mechanisms regulating RP gene expression in HSCs and establishes a common etiology of MYSM1 deficiency and ribosomopathy syndromes.

Authors

Jad I. Belle, HanChen Wang, Amanda Fiore, Jessica C. Petrov, Yun Hsiao Lin, Chu-Han Feng, Thi Tuyet Mai Nguyen, Jacky Tung, Philippe M. Campeau, Uta Behrends, Theresa Brunet, Gloria Sarah Leszinski, Philippe Gros, David Langlais, Anastasia Nijnik

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Figure 6

MYSM1-dependent regulation of ribosomal protein genes is independent of p53 activation.

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MYSM1-dependent regulation of ribosomal protein genes is independent of ...
(A) Gene Set Enrichment Analysis (GSEA) demonstrating reduced expressions of 80 RP genes in Mysm1–/– Puma+/– and Mysm1–/– Puma–/– hematopoietic stem and progenitor cells (LSK CD150+) relative to control WT cells; 10,987 genes expressed in the RNA-Seq data set are ranked based on signal/noise ratio, and each relevant RP gene is represented by a dot and a vertical bar below. Box plots for the relative log2 expression of the RP genes also show downregulation in Mysm1–/– Puma+/– and Mysm1–/– Puma–/– cells relative to control WT cells. (B) Downregulation of RP gene expression in Mysm1–/– and Mysm1–/– p53–/– hematopoietic progenitor cells; FACS-sorted LSK CD150– cells were analyzed by qPCR. Mean ± SEM from 3–5 mice per group is presented; statistical comparisons using 2-way ANOVA; ****P < 0.0001. (C and D) Analysis of eEF1G protein levels in hematopoietic stem and progenitor cells of WT, Mysm1–/–, and Mysm1–/– p53–/– mice by intracellular flow cytometry. Dot plots showing mean fluorescence intensity (MFI) of eEF1G staining (C), and representative flow cytometry histograms (D), gated on live CD150+ or CD150– Lin–cKit+Sca1+ (LSK) cells. Reduction in eEF1G levels in Mysm1–/– and Mysm1–/– p53–/– groups relative to the control WT group is shown. Mean ± SEM from 3–4 mice per genotype is presented; statistical comparisons using 1-way ANOVA with Bonferroni’s post hoc test; *P < 0.05, **P < 0.01.

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